The SEED: an Annotation/Analysis Tool Provided by FIG
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SEED version cvs.1555556707 (Wed Apr 17 22:05:07 2019) on gum.mcs.anl.gov
The SEED

FIG search
PEGs that Might Be in Clusters
Sim. Sc. Cluster Size PEG Genome Function Aliases
2.1e-022 7 fig|521098.4.peg.2147 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RidA/YER057c/UK114 superfamily protein gb|ACV57239.1, gi|257476920, gi|258510194, gnl|md5|c22314dc38398da24a7d776c, kegg|aac:Aaci_0176, ref|YP_003183628.1
4.8e-027 6 fig|107806.1.peg.357 Buchnera aphidicola str. APS (Acyrthosiphon pisum) RidA/YER057c/UK114 superfamily protein BU371, CDD:pfam01042, COG:COG0251, GeneID:1109725, NP_240189.1, cmr|NT01BA0400, dbj|BAB13075.1, gb|ACL30173.1, gb|ACL30727.1, gi|10039041, gi|11387294, gi|15616976, gi|219622017, gi|219624572, gi|219681729, gi|219682284, gi|25303222, gi|257471429, gnl|md5|dc20b4a86f2acb92eb85917d, img|637056383, kegg|bap:BUAP5A_364, kegg|bau:BUAPTUC7_365, kegg|buc:BU371, pir|, pir|C84973, ref|NP_240189.1, ref|YP_002468115.1, ref|YP_002468668.1, ref|ZP_05635428.1, sp|P57452, sp|Y371_BUCAI, tr|B8D7Q8, tr|B8D9F6, yhaR
9.3e-047 4 fig|321314.4.peg.3506 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 2-iminobutanoate/2-iminopropanoate deaminase RidA/TdcF (EC 3.5.99.10) GENE:yjgF, GeneID:3336866, LocusTag:SC4313, YP_219300.1, cmr|NT01ST5534, cmr|NT03ST5003, cmr|NT04ST4741, cmr|NT05SE4493, cmr|NT06SE4949, emb|CAD06919.1, emb|CAR35767.1, emb|CAR40046.1, emb|CAR62245.1, eric|ABS-0086219, eric|ABU-0103700, eric|ABX-0115031, eric|ADA-0004254, eric|ADB-0005086, gb|AAD22768.1, gb|AAL23277.1, gb|AAO71940.1, gb|AAV79993.1, gb|AAX68219.1, gb|ABX70881.1, gb|ACF62902.1, gb|ACF68511.1, gb|ACF91086.1, gb|ACH51331.1, gb|ACH76760.1, gb|ACN48639.1, gb|AF095578_1, gb|EDX45400.1, gb|EDX51054.1, gb|EDY26879.1, gb|EDY30998.1, gb|EDZ03473.1, gb|EDZ08625.1, gb|EDZ11735.1, gb|EDZ17103.1, gb|EDZ19787.1, gb|EDZ23772.1, gb|EDZ29009.1, gb|EDZ35521.1, gb|EEH94832.1, gi|161367113, gi|161617749, gi|16423022, gi|16505567, gi|167551290, gi|16763259, gi|16767703, gi|167991242, gi|168232792, gi|168234582, gi|168244059, gi|168262502, gi|168464666, gi|168821121, gi|194402680, gi|194408292, gi|194444017, gi|194449988, gi|194456561, gi|194470197, gi|194711865, gi|194736363, gi|195632600, gi|197096630, gi|197213934, gi|197244259, gi|197250231, gi|197266004, gi|197291648, gi|197365153, gi|197939427, gi|198244911, gi|199604928, gi|200387830, gi|204323430, gi|204926765, gi|205274973, gi|205323896, gi|205330339, gi|205333023, gi|205337008, gi|205342245, gi|205348890, gi|205355192, gi|206711389, gi|207859586, gi|213161821, gi|213419993, gi|213427655, gi|213585765, gi|213619431, gi|213646809, gi|213855603, gi|213976445, gi|214000027, gi|224470809, gi|224586281, gi|226908914, gi|237729185, gi|238910614, gi|25303243, gi|29140377, gi|29144738, gi|4558864, gi|56130487, gi|56416230, gi|62130516, gi|62182883, gnl|md5|e2ee10f774a51c651f1a5761, img|637215146, img|637219652, img|637408134, img|637604365, img|637643259, img|641326027, img|641859467, img|641862617, img|641868090, img|641874833, img|641879530, img|641885859, img|642114753, img|642120640, img|642122449, img|642128774, img|642137375, img|642143885, img|642149869, img|642157725, img|642167512, img|642172903, img|642176245, img|642740019, img|642744909, img|642749646, img|642774122, img|642778814, img|642787728, kegg|sea:SeAg_B4742, kegg|sec:SC4313, kegg|sed:SeD_A4840, kegg|see:SNSL254_A4805, kegg|seg:SG4284, kegg|seh:SeHA_C4861, kegg|sei:SPC_4590, kegg|sek:SSPA3956, kegg|set:SEN4209, kegg|sew:SeSA_A4711, kegg|spq:SPAB_05612, kegg|spt:SPA4259, kegg|stm:STM4458, kegg|stt:t4493, kegg|sty:STY4798, pir|, pir|AB1059, ref|NP_458876.1, ref|NP_463318.1, ref|NP_808080.1, ref|YP_001591714.1, ref|YP_002043697.1, ref|YP_002048482.1, ref|YP_002117379.1, ref|YP_002144790.1, ref|YP_002149376.1, ref|YP_002218322.1, ref|YP_002228993.1, ref|YP_002246237.1, ref|YP_002640080.1, ref|YP_153305.1, ref|YP_219300.1, ref|ZP_02345045.1, ref|ZP_02572341.1, ref|ZP_02657850.1, ref|ZP_02659640.1, ref|ZP_02668991.1, ref|ZP_02684475.1, ref|ZP_02698569.1, ref|ZP_02833121.1, ref|ZP_03076181.1, ref|ZP_03166078.1, ref|ZP_03214442.1, ref|ZP_03217967.1, ref|ZP_03347531.1, ref|ZP_03353059.1, ref|ZP_03360405.1, ref|ZP_03367591.1, ref|ZP_03373257.1, ref|ZP_03376862.1, ref|ZP_03383843.1, ref|ZP_03403704.1, ref|ZP_03410762.1, ref|ZP_04559666.1, ref|ZP_04654451.1, tr|A9N657, tr|B3YIR2, tr|B4A4F2, tr|B4T3K4, tr|B4TG39, tr|B4TT81, tr|B5BKQ7, tr|B5BVH4, tr|B5C7Z1, tr|B5F444, tr|B5FSF1, tr|B5MMJ9, tr|B5MY15, tr|B5N9B3, tr|B5NT92, tr|B5P6X2, tr|B5PI76, tr|B5PVZ2, tr|B5Q3N1, tr|B5R1I4, tr|B5R9J7, tr|C0Q7B6, tr|C1MBZ8, tr|Q57GE3, tr|Q5PJB4, tr|Q7CP78, tr|Q9X445, yjgF
1.2e-046 4 fig|216895.1.peg.1339 Vibrio vulnificus CMCP6 RidA/YER057c/UK114 superfamily protein GeneID:1178377, NP_760375.1, VV11463, gb|AAO09902.1, gb|AE016801_221, gi|27360992, gi|27364847, gnl|md5|11664c5354e9d5d9bf5a430c, img|637361822, kegg|vvu:VV1_1463, ref|NP_760375.1, tr|Q8DCF8
2.1e-046 4 fig|243277.1.peg.2482 Vibrio cholerae O1 biovar eltor str. N16961 2-iminobutanoate/2-iminopropanoate deaminase RidA/TdcF (EC 3.5.99.10) GeneID:2615176, NP_232141.1, VC2512, cmr|VC0395_A2094, cmr|VC_2512, gb|AAF95654.1, gb|ABQ20269.1, gb|ACP06731.1, gb|ACP10612.1, gb|ACQ60015.1, gb|EAX57054.1, gb|EAX62642.1, gb|EAY37968.1, gb|EAZ49868.1, gb|EAZ74061.1, gb|EAZ77289.1, gb|EDL72866.1, gb|EDN11862.1, gb|EEO00670.1, gb|EEO06176.1, gb|EEO10805.1, gb|EEO14271.1, gb|EEO18058.1, gb|EEO19856.1, gb|EET25175.1, gb|EET93428.1, gi|121546900, gi|121591254, gi|121630242, gi|121727470, gi|124119225, gi|125621536, gi|126511467, gi|126520066, gi|146315730, gi|147673847, gi|148874731, gi|150419536, gi|153222004, gi|153818032, gi|153822423, gi|153829813, gi|15642508, gi|227010519, gi|227014402, gi|227082631, gi|227118952, gi|229335185, gi|229341172, gi|229345833, gi|229349315, gi|229353119, gi|229354935, gi|229369592, gi|229507430, gi|229509645, gi|229513438, gi|229516770, gi|229521578, gi|229527553, gi|229606937, gi|254223984, gi|254225910, gi|254846761, gi|254851056, gi|255738035, gi|255744510, gi|9657095, gnl|md5|8657c9c8599e3dea4a8c0618, img|637049007, img|638699138, img|638705273, img|638709709, img|638713268, img|640199488, img|640533550, img|640991643, img|641012679, img|641017182, img|641024678, kegg|vch:VC2512, kegg|vcj:VCD_001846, kegg|vcm:VCM66_2434, kegg|vco:VC0395_A2094, ref|NP_232141.1, ref|YP_001218010.1, ref|YP_002811182.1, ref|YP_002820848.1, ref|YP_002877585.1, ref|ZP_01678553.1, ref|ZP_01680598.1, ref|ZP_01952831.1, ref|ZP_01970699.1, ref|ZP_01975090.1, ref|ZP_01982480.1, ref|ZP_04396935.1, ref|ZP_04399126.1, ref|ZP_04402902.1, ref|ZP_04406216.1, ref|ZP_04410996.1, ref|ZP_04416945.1, ref|ZP_04917813.1, ref|ZP_04919512.1, ref|ZP_05240406.1, ref|ZP_05418462.1, tr|A1ELY0, tr|A1F9M4, tr|A2PHE2, tr|A3EKP9, tr|A3GM75, tr|A3GZU6, tr|A5F5D1, tr|A6AEH9, tr|A6Y687, tr|C2C698, tr|C2I626, tr|C2IDM8, tr|C2IQC5, tr|C2JF97, tr|C3LR53, tr|C3NV92, tr|Q9KP64
1.8e-045 4 fig|343509.6.peg.4628 Sodalis glossinidius str. 'morsitans' 2-iminobutanoate/2-iminopropanoate deaminase RidA (EC 3.5.99.10) SG2117, dbj|BAE75392.1, gi|84780615, gi|85060095, gnl|md5|206b486b0e0cb95a9e741232, img|637854095, kegg|sgl:SG2117, ref|YP_455797.1, tr|Q2NR33
1.3e-045 3 fig|312309.3.peg.404 Vibrio fischeri ES114 2-iminobutanoate/2-iminopropanoate deaminase RidA/TdcF (EC 3.5.99.10) GeneID:3278307, LocusTag:VF0404, YP_203787.1, cmr|NT01VF0428, gb|AAW84899.1, gb|ACH66351.1, gi|197316904, gi|197335414, gi|59479112, gi|59711011, gnl|md5|00f4c88c900fb5f138ba2371, img|637635037, img|641486783, img|642779378, kegg|vfi:VF_0404, kegg|vfm:VFMJ11_0394, ref|YP_002155160.1, ref|YP_203787.1, tr|B5F9P7, tr|Q5E7U7
3.7e-043 3 fig|171440.1.peg.3398 Photorhabdus asymbiotica subsp. asymbiotica RidA/YER057c/UK114 superfamily protein emb|CAQ86089.1, emb|CAR66974.1, gi|211638352, gi|253782924, gi|253991474, gnl|md5|88444b7774bdf58801c67aee, kegg|pay:PAU_04001, ref|YP_003042830.1, tr|B6VLE4
3.3e-028 3 fig|207559.3.peg.137 Desulfovibrio desulfuricans G20 RidA/YER057c/UK114 superfamily protein GeneID:3755726, LocusTag:Dde_0809, YP_387305.1, cmr|NT01DS0838, gb|ABB37610.1, gi|78218261, gi|78355856, gnl|md5|5a0575f9ccfbfeb46111cac3, img|637781674, kegg|dde:Dde_0809, ref|YP_387305.1, tr|Q314N6
4.0e-026 3 fig|491915.4.peg.40 Anoxybacillus flavithermus WK1 RidA/YER057c/UK114 superfamily protein gb|ACJ32425.1, geneID|7036235, gene_name|yabJ, gi|212559370, gi|212637890, gnl|md5|79fba2e515496a48f6f4aeb8, kegg|afl:Aflv_0041, locus|Aflv_0041, protein_id|YP_002314410.1, ref|YP_002314410.1, tr|B7GFH5
2.9e-048 2 fig|298386.1.peg.2699 Photobacterium profundum SS9 2-iminobutanoate/2-iminopropanoate deaminase RidA/TdcF (EC 3.5.99.10) cmr|NT01PP0495, emb|CAG18901.1, gi|46912106, gi|54307683, gnl|md5|cc1597e8f8d36dbe4afb39a0, img|637585179, kegg|ppr:PBPRA0470, ref|YP_128703.1, tr|Q6LUX4
5.0e-048 2 fig|314280.3.peg.5028 Photobacterium profundum 3TCK RidA/YER057c/UK114 superfamily protein gb|EAS43516.1, gi|90327144, gi|90411886, gnl|md5|8226994ad71c49ab941f53ca, img|639097830, ref|ZP_01219894.1, tr|Q1Z4V5
2.5e-044 2 fig|314290.3.peg.4154 Vibrio sp. MED222 RidA/YER057c/UK114 superfamily protein gb|EAQ52752.1, gi|85834604, gi|86147565, gnl|md5|d25fcf62d698e3f65dc9da93, img|638941455, ref|ZP_01065875.1, tr|A3Y193
4.3e-044 2 fig|615.1.peg.4332 Serratia marcescens Db11 RidA/YER057c/UK114 superfamily protein gnl|md5|96bf0163bb54f22aef87ce2f
1.0e-040 2 fig|262727.1.peg.1432 Haemophilus influenzae R2846 RidA/YER057c/UK114 superfamily protein CDD:pfam01042, CDD:pfam04262, COG: COG0251, Hflu1021542, ZP_00154518.1, gi|42628967, gnl|md5|bd2675e727e3fa54207731ea, img|638420556, ref|ZP_00154518.1
5.0e-040 2 fig|584.1.peg.1273 Proteus mirabilis HI4320 RidA/YER057c/UK114 superfamily protein emb|CAR46764.1, gb|EEI47693.1, gi|194684751, gi|197287264, gi|227162730, gi|227357038, gnl|md5|41179b92a45b8c2e74cd149d, img|642579854, kegg|pmr:PMI3452, ref|YP_002153136.1, ref|ZP_03841408.1, tr|B4F2L9, tr|C2LKA9
7.9e-030 2 fig|391774.5.peg.1098 Desulfovibrio vulgaris subsp. vulgaris DP4 RidA/YER057c/UK114 superfamily protein Dvul_1033, GeneID:4664380, InterPro:IPR006056, InterPro:IPR006175, YP_966480.1, gb|ABM28053.1, gi|120562309, gi|120602080, gnl|md5|e4f40c06b4b13ab7d6f2c660, img|639819257, kegg|dvl:Dvul_1033, ref|YP_966480.1, tr|A1VC87
1.8e-029 2 fig|1496.1.peg.815 Clostridium difficile 630 RidA/YER057c/UK114 superfamily protein cmr|NT03CD3549, emb|CAJ70084.1, gi|115252243, gi|126700806, gi|145953686, gi|254976776, gi|255094162, gi|255102330, gi|255308224, gi|255315914, gi|255518573, gi|255651693, gi|255657135, gnl|md5|02998657f0ee423a571760d3, img|638872714, img|640159045, img|642230282, img|642236707, img|642240575, img|642241448, img|642836526, img|642838210, img|642843615, kegg|cdf:CD3187, pathema|ntcd03.1.cds.ORF03544, ref|YP_001089703.1, ref|ZP_01802694.1, ref|ZP_05273248.1, ref|ZP_05323640.1, ref|ZP_05331307.1, ref|ZP_05352395.1, ref|ZP_05357497.1, ref|ZP_05386249.1, ref|ZP_05398595.1, ref|ZP_05402544.1, tr|Q181V0
1.1e-028 2 fig|291272.3.peg.274 Blochmannia pennsylvanicus str. BPEN RidA/YER057c/UK114 superfamily protein GENE:yjgF, GeneID:3562916, LocusTag:BPEN_031, YP_277552.1, cmr|NT07CP0030, gb|AAZ40680.1, gi|71795929, gi|71891823, gnl|md5|c3c29897c5ff94960b8f415b, img|637672470, kegg|bpn:BPEN_031, ref|YP_277552.1, tr|Q494A1, yjgF
1.3e-027 2 fig|68909.1.peg.1175 Deinococcus geothermalis DSM11300 RidA/YER057c/UK114 superfamily protein gb|ABF44533.1, gi|94554619, gi|94984338, gnl|md5|56c07b359c7b5317767cd29b, img|637996996, img|641229230, kegg|dge:Dgeo_0230, ref|YP_603702.1, tr|Q1J1V1
1.7e-027 2 fig|93062.4.peg.995 Staphylococcus aureus subsp. aureus COL RidA/YER057c/UK114 superfamily protein GeneID:3238252, LocusTag:SACOL0540, YP_185428.1, cmr|NT05SA0416, cmr|SACOL0540, cmr|SAUSA300_0474, dbj|BAF66732.1, gb|AAW36317.1, gb|ABD22759.1, gb|ABD29623.1, gb|EEV82361.1, gb|EEW44620.1, gb|EEW46500.1, gi|150373472, gi|151220672, gi|221138546, gi|221142311, gi|257859508, gi|258452822, gi|259159573, gi|259161917, gi|57284223, gi|57650037, gi|87128245, gi|87162271, gi|87201813, gi|88194255, gnl|md5|49bc9ff5e59d04d771475297, img|637151315, img|637887128, img|637893125, img|640794823, img|641772088, kegg|saa:SAUSA300_0474, kegg|sac:SACOL0540, kegg|sae:NWMN_0460, kegg|sao:SAOUHSC_00468, ref|YP_001331494.1, ref|YP_185428.1, ref|YP_493183.1, ref|YP_499047.1, ref|ZP_03563348.1, ref|ZP_03566804.1, ref|ZP_05700817.1, tr|A6QEF0, tr|Q2FJE5, tr|Q2G0S6, tr|Q5HIH9
6.3e-027 2 fig|226186.1.peg.1336 Bacteroides thetaiotaomicron VPI-5482 RidA/YER057c/UK114 superfamily protein BT1336, GeneID:1073169, NP_810249.1, gb|AAO76443.1, gb|EES65610.1, gi|251837517, gi|253572885, gi|29338643, gi|29346746, gnl|md5|c47a66fdfa76ef630aa65a8d, img|637409767, kegg|bth:BT_1336, ref|NP_810249.1, ref|ZP_04850283.1, tr|C6IUA2, tr|Q8A838
1.8e-026 2 fig|441770.4.peg.1774 Clostridium botulinum A str. ATCC 19397 RidA/YER057c/UK114 superfamily protein CLB_1900, GeneID:5397306, YP_001384220.1, cmr|CLB_1900, cmr|CLC_1906, cmr|NT02CB1953, emb|CAL83503.1, gb|ABS34380.1, gb|ABS37936.1, gi|148289407, gi|148379923, gi|152928880, gi|152932437, gi|153932836, gi|153936523, gnl|md5|2a7bc9ce6ad057fbaa853088, img|640573560, img|640847888, img|640851544, kegg|cba:CLB_1900, kegg|cbh:CLC_1906, kegg|cbo:CBO1961, pathema|clc.2.cds.ORF00358, pathema|ntcb02.3.cds.ORF01948, ref|YP_001254464.1, ref|YP_001384220.1, ref|YP_001387761.1, tr|A5I386, tr|A7FV17
2.0e-025 2 fig|469381.4.peg.336 Dethiosulfovibrio peptidovorans DSM 11002 RidA/YER057c/UK114 superfamily protein gb|EEK27781.1, gi|228563154, gi|229214280, gnl|md5|8cbf88d8d06a6b4ab7c888c0, ref|ZP_04340625.1, tr|C1TP46
3.8e-024 2 fig|203907.1.peg.31 Blochmannia floridanus RidA/YER057c/UK114 superfamily protein Bfl031, GeneID:1499231, NP_878346.1, cmr|NT02BF0030, emb|CAD83559.1, gi|33517177, gi|33519514, gnl|md5|e96d71ae53743a3701fa43fc, img|637443507, kegg|bfl:Bfl031, ref|NP_878346.1, tr|Q7VQT4, yjgF

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