The SEED: an Annotation/Analysis Tool Provided by FIG
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SEED version cvs.1555556707 (Wed Apr 17 22:05:07 2019) on gum.mcs.anl.gov
The SEED

FIG search
PEGs that Might Be in Clusters
Sim. Sc. Cluster Size PEG Genome Function Aliases
5.1e-18 10 fig|370553.3.peg.1353 Streptococcus pyogenes MGAS2096 Two component transcriptional regulator VraR GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, GeneID:4064719, MGAS2096_Spy1353, YP_600949.1, dbj|BAC63591.1, gb|AAT87513.1, gb|AAX72483.1, gb|ABF32514.1, gb|ABF34513.1, gb|ABF36405.1, gb|ABF38391.1, gi|28810654, gi|28895408, gi|50903798, gi|50914724, gi|71803130, gi|71904035, gi|94542465, gi|94544465, gi|94546358, gi|94548345, gi|94988957, gi|94990957, gi|94992850, gi|94994837, gnl|md5|34b6095bb614a790c1d34912, img|637402458, img|637524547, img|637675940, img|637990092, img|637992172, img|637994145, img|637996212, kegg|spa:M6_Spy1378, kegg|spb:M28_Spy1373, kegg|sph:MGAS10270_Spy1448, kegg|spi:MGAS10750_Spy1441, kegg|spj:MGAS2096_Spy1353, kegg|spk:MGAS9429_Spy1327, kegg|sps:SPs0496, ref|NP_801758.1, ref|YP_060696.1, ref|YP_280838.1, ref|YP_597058.1, ref|YP_599057.1, ref|YP_600949.1, ref|YP_602935.1, tr|Q1J5J5, tr|Q1JAK3, tr|Q1JFP6, tr|Q1JKQ5, tr|Q48S27, tr|Q5XAQ0, tr|Q879E8, yvqC
1.4e-20 7 fig|224308.1.peg.3555 Bacillus subtilis subsp. subtilis str. 168 Two-component transcriptional response regulator DegU, LuxR family Bsu3546, GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0005737, GO:0006350, GO:0006355, GO:0043565, GeneID:936751, NP_391429.1, cmr|NT01BS4477, degU, emb|CAB15566.1, emb|CAJ97429.1, emb|CAM35818.1, gb|AAA22545.1, gb|AAA22733.1, gb|AAA22735.1, gb|AAC44938.1, gb|ABS75594.1, gb|ACI22669.1, gi|118438, gi|126363001, gi|143089, gi|143499, gi|143502, gi|154353515, gi|154687664, gi|16080602, gi|1762330, gi|206967377, gi|219937642, gi|221311500, gi|221315827, gi|221320742, gi|221325027, gi|2636075, gnl|md5|9b60639821277c9054618995, img|637033735, img|640887310, kegg|bay:RBAM_032640, kegg|bsu:BSU35490, pathema|ntbs01.2.cds.ORF06502, ref|NP_391429.1, ref|YP_001422825.1, ref|ZP_03593347.1, ref|ZP_03597632.1, ref|ZP_03602036.1, ref|ZP_03606321.1, sp|DEGU_BACSU, sp|P13800, tr|A3KLC2, tr|A7Z9B8, tr|B6E110, tr|B7ZDP0
1.9e-20 6 fig|36873.1.peg.6183 Burkholderia xenovorans LB400 DNA-binding response regulator, LuxR family GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, gb|ABE31115.1, gi|91687915, gi|91783961, gnl|md5|3a97f34483908d7667c79ae6, img|637947786, kegg|bxe:Bxe_A1850, ref|YP_559167.1, tr|Q13XS4
1.2e-19 6 fig|243277.1.peg.3411 Vibrio cholerae O1 biovar eltor str. N16961 Nitrate/nitrite response regulator protein NarP GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, GeneID:2612192, NP_233070.1, VCA0682, cmr|VC_A0682, gb|AAF96582.1, gb|ACP07602.1, gb|ACQ62603.1, gb|EAX60191.1, gb|EAY39327.1, gb|EAZ73964.1, gb|EAZ78972.1, gb|EEO11305.1, gb|EEO17371.1, gb|EEO21425.1, gb|EET23961.1, gb|EET91701.1, gi|121550177, gi|121585560, gi|124120584, gi|126511370, gi|126521749, gi|153220024, gi|153818102, gi|153820706, gi|15601439, gi|227011391, gi|227812249, gi|229346334, gi|229352431, gi|229356507, gi|229372181, gi|229506156, gi|229509986, gi|229516453, gi|229605695, gi|254845547, gi|254849842, gi|255736303, gi|255746549, gi|9658099, gnl|md5|776db7246aab81dbfab4a816, img|637049951, img|638697912, img|640196277, img|640990355, img|641012789, img|641015413, kegg|vch:VCA0682, kegg|vcj:VCD_000643, kegg|vcm:VCM66_A0640, ref|NP_233070.1, ref|YP_002812259.1, ref|YP_002876399.1, ref|ZP_01675356.1, ref|ZP_01951593.1, ref|ZP_01970769.1, ref|ZP_01973373.1, ref|ZP_04395665.1, ref|ZP_04399466.1, ref|ZP_04405900.1, ref|ZP_05239192.1, ref|ZP_05420496.1, tr|A1F0L1, tr|A2PDS7, tr|A3GMI4, tr|A3GUV3, tr|C2ICR2, tr|C2JBR6, tr|C3LVU7, tr|C3NWV7, tr|Q9KLR0
2.3e-18 6 fig|221109.1.peg.2518 Oceanobacillus iheyensis HTE831 Two-component transcriptional response regulator, LuxR family GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, GeneID:1016835, NP_693440.1, OB2519, cmr|NT01OI2729, dbj|BAC14475.1, degU, gi|22778205, gi|23099974, gnl|md5|ad139bd90dfdb63307394bfe, img|637326176, kegg|oih:OB2519, ref|NP_693440.1, tr|Q8ENG4
9.4e-20 5 fig|224914.1.peg.1581 Brucella melitensis 16M Two-component transcriptional response regulator, LuxR family BMEI1582, GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, GeneID:1197293, NP_540499.1, cmr|BR_0342, cmr|GBOORF0372, cmr|NT01BM1957, gb|AAL52763.1, gb|AAN29289.1, gb|ABQ60887.1, gb|ABX61439.1, gb|ABY37464.1, gb|ACO00164.1, gb|ACU47356.1, gb|EEH15563.1, gi|148370908, gi|148559651, gi|161335134, gi|161618323, gi|163673353, gi|163842630, gi|17983597, gi|17987865, gi|225618520, gi|225626863, gi|225640250, gi|225851885, gi|23347130, gi|23501247, gi|254701158, gi|254703704, gi|254707920, gi|254709500, gi|254713082, gi|254716565, gi|255998957, gi|256030994, gi|256044064, gi|256060484, gi|256112861, gi|256159043, gi|256254397, gi|256264603, gi|256368799, gnl|md5|521843c676677c6f3206b97a, img|637248632, img|637329290, img|640577400, img|641326533, img|641359089, kegg|bcs:BCAN_A0350, kegg|bme:BMEI1582, kegg|bmi:BMEA_A0378, kegg|bmr:BMI_I347, kegg|bms:BR0342, kegg|bmt:BSUIS_A0373, kegg|bov:BOV_0358, patric|cds.000700.790085, patric|cds.000718.227431, patric|cds.000746.749424, patric|cds.000800.822458, patric|cds.003492.102962, ref|NP_540499.1, ref|NP_697374.1, ref|YP_001258379.1, ref|YP_001592210.1, ref|YP_001627034.1, ref|YP_002732118.1, ref|YP_003106305.1, ref|ZP_03784902.1, ref|ZP_05162986.1, ref|ZP_05165532.1, ref|ZP_05169748.1, ref|ZP_05171311.1, ref|ZP_05174893.1, ref|ZP_05178376.1, ref|ZP_05444608.1, ref|ZP_05446975.1, ref|ZP_05450655.1, ref|ZP_05453782.1, ref|ZP_05456876.1, ref|ZP_05459933.1, ref|ZP_05467135.1, tr|A5VNT2, tr|A9M8C3, tr|B0CK34, tr|C0G498, tr|C0RH56, tr|Q8G2I0, tr|Q8YFE0
1.1e-23 4 fig|216432.3.peg.1332 Croceibacter atlanticus HTCC2559 Two-component transcriptional response regulator, LuxR family GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, gb|EAP88407.1, gi|83850539, gi|83856739, gnl|md5|860845ccaabee73baff4b273, img|638888538, ref|ZP_00950268.1, tr|A3U840
1.2e-19 4 fig|321314.4.peg.391 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 Secretion system regulator of DegU/UvrY/BvgA type GENE:ssrB, GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, GeneID:3333868, LocusTag:SC1412, YP_216399.1, cmr|NT05SE1527, cmr|NT06SE1624, emb|CAR59535.1, eric|ADA-0001462, eric|ADB-0001642, gb|AAV77401.1, gb|AAX65318.1, gb|ACH50047.1, gb|ACN46455.1, gb|EDX44727.1, gb|EDZ19113.1, gb|EDZ28124.1, gi|168233585, gi|168822260, gi|194455888, gi|194469524, gi|197094039, gi|197212650, gi|197248947, gi|197362562, gi|205332349, gi|205341360, gi|224468625, gi|224584098, gi|56127895, gi|56413638, gi|62127615, gi|62179982, gnl|md5|d5baa28c7af97daf0246b138, img|637601697, img|637640287, img|641857099, img|642121438, img|642130420, img|642168656, img|642771433, img|642776015, kegg|sea:SeAg_B1780, kegg|sec:SC1412, kegg|sei:SPC_2338, kegg|sek:SSPA1360, kegg|spt:SPA1462, ref|YP_002142199.1, ref|YP_002146649.1, ref|YP_002637896.1, ref|YP_150713.1, ref|YP_216399.1, ref|ZP_02658643.1, ref|ZP_02834260.1, ref|ZP_03075508.1, ssrB, tr|B3Y9Q1, tr|B5BA00, tr|B5F7A7, tr|B5NV47, tr|B5PL33, tr|C0Q5Y9, tr|Q57PP3, tr|Q5PH47
1.0e-18 4 fig|272562.1.peg.410 Clostridium acetobutylicum ATCC 824 Two-component transcriptional response regulator, NarL/FixJ family CAC0240, GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, GeneID:1116423, NP_346881.1, cmr|NT01CA0260, gb|AAK78221.1, gb|AE007537_6, gi|15023075, gi|15893532, gnl|md5|484b5dfccba0f4869b616962, img|637175895, kegg|cac:CAC0240, pathema|ntca01.5.cds.ORF00356, ref|NP_346881.1, tr|Q97MF8
3.0e-18 4 fig|169963.1.peg.2505 Listeria monocytogenes EGD-e Two-component transcriptional response regulator DegU, LuxR family CDD:pfam00072, CDD:pfam00196, CDD:smart00421, CDD:smart00448, GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0008233, GO:0043565, GeneID:987300, NP_466038.1, cmr|LMOf2365_2488, cmr|LMOf6854_2577, cmr|LMOh7858_2665, cmr|NT01LI2777, cmr|NT01LM2697, emb|CAC97885.1, emb|CAD00593.1, emb|CAS06239.1, gb|AAT05253.1, gb|AAT74538.1, gb|ACK38447.1, gb|EAL06501.1, gb|EAL08692.1, gb|EEW13800.1, gb|EEW19953.1, gb|EEW23007.1, gi|16412003, gi|16415195, gi|16801720, gi|16804553, gi|217332653, gi|217963383, gi|224499869, gi|224503244, gi|225877525, gi|226225063, gi|254825362, gi|254828090, gi|254831062, gi|254853956, gi|254872205, gi|254879159, gi|254900347, gi|254913414, gi|254932243, gi|254937795, gi|254993056, gi|255030722, gi|255521855, gi|258600475, gi|258607345, gi|258610399, gi|46881959, gi|46908687, gi|47015569, gi|47017911, gi|47093717, gi|47096108, gi|50313181, gnl|md5|1d22d510a40707259ce68c66, img|637166287, img|637222367, img|637225433, img|638424026, img|638427914, img|640968139, img|640972658, img|640978629, img|640983608, img|641762979, img|641765703, kegg|lin:lin2659, kegg|lmc:Lm4b_02484, kegg|lmf:LMOf2365_2488, kegg|lmh:LMHCC_0084, kegg|lmo:lmo2515, lmo2515, ref|NP_466038.1, ref|NP_471988.1, ref|YP_002349061.1, ref|YP_002759170.1, ref|YP_015076.1, ref|ZP_00231469.1, ref|ZP_00233709.1, ref|ZP_03668218.1, ref|ZP_03671551.1, ref|ZP_05230363.1, ref|ZP_05232777.1, ref|ZP_05235717.1, ref|ZP_05243304.1, ref|ZP_05244915.1, ref|ZP_05251869.1, ref|ZP_05260271.1, ref|ZP_05263426.1, ref|ZP_05265602.1, ref|ZP_05269492.1, ref|ZP_05275246.1, ref|ZP_05302673.1, ref|ZP_05389092.1, tr|B8DBJ6, tr|C1KYT2, tr|Q4EFX8, tr|Q4ERW1, tr|Q71WR3, tr|Q7ANV1, tr|Q927X8
9.3e-36 3 fig|208964.1.peg.3947 Pseudomonas aeruginosa PAO1 Two-component transcriptional response regulator, LuxR family GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, GeneID:878843, NP_252637.1, PA3948, cmr|NT03PA4558, emb|CAW25754.1, gb|AAG07335.1, gb|AE004813_2, gi|107103465, gi|15599143, gi|218769992, gi|218889769, gi|9950136, gnl|md5|8677c3161a83fe9bcae9e734, img|637054368, img|639191714, kegg|pae:PA3948, kegg|pag:PLES_10271, ref|NP_252637.1, ref|YP_002438633.1, ref|ZP_01367383.1, tr|B7VAH3, tr|Q9HX68
7.7e-30 3 fig|264198.3.peg.5242 Ralstonia eutropha JMP134 Two-component transcriptional response regulator, LuxR family GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, GeneID:3612841, LocusTag:Reut_B4470, YP_298664.1, gb|AAZ63820.1, gi|72121634, gi|73538297, gnl|md5|2e68d367f7fa7f28490bd8f4, img|637693899, kegg|reu:Reut_B4470, ref|YP_298664.1, tr|Q46SR4
1.3e-21 3 fig|243365.1.peg.2599 Chromobacterium violaceum ATCC 12472 Two-component transcriptional response regulator, LuxR family CV2599, GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, GeneID:2547257, NP_902269.1, cmr|NT01CV2550, gb|AAQ60269.1, gi|34103909, gi|34498054, gnl|md5|3795f0f982a77aae29943fa7, img|637453407, kegg|cvi:CV_2599, ref|NP_902269.1, tr|Q7NUU8
9.4e-20 3 fig|93062.4.peg.2447 Staphylococcus aureus subsp. aureus COL Oxygen-sensing two-component transcriptional response regulator NreC GO:0000156, GO:0000160, GO:0003700, GO:0005737, GO:0006350, GO:0006355, GO:0043565, GeneID:3236206, LocusTag:SACOL2389, YP_187192.1, cmr|NT02SA2390, cmr|NT03SA2492, cmr|SACOL2389, cmr|SAUSA300_2337, dbj|BAB43481.1, dbj|BAB58553.1, dbj|BAB96178.1, dbj|BAF68563.1, dbj|BAF79258.1, emb|CAG44095.1, gb|AAW37214.1, gb|ABD22829.1, gb|ABQ50195.1, gb|ABR53288.1, gb|ABX30363.1, gb|EES56013.1, gb|EES95005.1, gb|EES96617.1, gb|EEV27043.1, gb|EEV65374.1, gb|EEV66129.1, gb|EEV71431.1, gb|EEV75845.1, gb|EEV77526.1, gb|EEV79374.1, gb|EEV83911.1, gb|EEV85230.1, gb|EEW45552.1, gb|EEW47620.1, gi|123735950, gi|13702340, gi|14248165, gi|147741897, gi|148268828, gi|149947352, gi|150375303, gi|150394900, gi|151222503, gi|156722841, gi|156980706, gi|15925381, gi|15927969, gi|160369392, gi|161510583, gi|205829240, gi|205829241, gi|205829243, gi|205829244, gi|205829245, gi|205829309, gi|21205485, gi|21284042, gi|221138474, gi|221141331, gi|251803356, gi|251813173, gi|253314728, gi|253726276, gi|253727888, gi|253730063, gi|253734193, gi|255007165, gi|257788703, gi|257794731, gi|257840923, gi|257841692, gi|257847429, gi|257851911, gi|257854578, gi|257856465, gi|257861096, gi|257862462, gi|258407411, gi|258422261, gi|258439653, gi|258442790, gi|258446510, gi|258450373, gi|258451304, gi|258455251, gi|259160529, gi|259163059, gi|49245616, gi|49487173, gi|57285120, gi|57650934, gi|81693835, gi|81696270, gi|81704173, gi|81705142, gi|81855884, gi|87128315, gi|87162341, gnl|md5|a64e41f92c7f1fe4d4fe1b74, img|637093932, img|637100948, img|637153145, img|637158551, img|637300130, img|637888980, img|639109814, img|640566803, img|640780575, img|640796722, img|640905173, img|641310377, img|641773064, kegg|saa:SAUSA300_2337, kegg|sac:SACOL2389, kegg|sae:NWMN_2291, kegg|sah:SaurJH1_2463, kegg|saj:SaurJH9_2415, kegg|sam:MW2313, kegg|sas:SAS2282, kegg|sau:SA2179, kegg|sav:SAV2391, kegg|saw:SAHV_2375, kegg|sax:USA300HOU_2373, ref|NP_372915.1, ref|NP_375502.1, ref|NP_647130.1, ref|YP_001247771.1, ref|YP_001317575.1, ref|YP_001333325.1, ref|YP_001442965.1, ref|YP_001576242.1, ref|YP_044394.1, ref|YP_187192.1, ref|YP_494972.1, ref|ZP_03563276.1, ref|ZP_03565824.1, ref|ZP_04827646.1, ref|ZP_04837941.1, ref|ZP_04864228.1, ref|ZP_04868358.1, ref|ZP_05145766.2, ref|ZP_05643710.1, ref|ZP_05680554.1, ref|ZP_05685173.1, ref|ZP_05690399.1, ref|ZP_05691350.1, ref|ZP_05694665.1, ref|ZP_05698465.1, ref|ZP_05699337.1, ref|ZP_05703211.1, sp|A5IVH2, sp|A6QJN1, sp|A6U4C0, sp|A7X623, sp|A8Z580, sp|NREC_STAA1, sp|NREC_STAA2, sp|NREC_STAA3, sp|NREC_STAA8, sp|NREC_STAA9, sp|NREC_STAAC, sp|NREC_STAAE, sp|NREC_STAAM, sp|NREC_STAAN, sp|NREC_STAAS, sp|NREC_STAAT, sp|NREC_STAAW, sp|Q2FEA6, sp|Q2FVM7, sp|Q5HDG5, sp|Q6G6T0, sp|Q7A029, sp|Q7A3U5, sp|Q99RN8, tr|C5MZT6, tr|C5Q2I9, tr|C5QFT0
2.1e-19 3 fig|272558.1.peg.1200 Bacillus halodurans C-125 Cell envelope stress response system LiaFSR, response regulator LiaR(VraR) BH1200, GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, NP_242066.1, cmr|NT01BH1343, dbj|BAB04919.1, gi|10173816, gi|15613763, gnl|md5|a5b2b93783fedef7085f1c2c, img|637057898, kegg|bha:BH1200, ref|NP_242066.1, tr|Q9KDL2
8.8e-18 3 fig|83333.1.peg.1894 Escherichia coli K12 BarA-associated response regulator UvrY (= GacA = SirA) GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0005737, GO:0006350, GO:0006355, GO:0043565, GeneID:946424, NP_416424.1, b1914, cmr|EcSMS35_1269, cmr|NT01EC2330, cmr|NT02SB1171, cmr|NT04SS1275, cmr|NT11EC1981, dbj|BAA15734.1, dbj|BAG77668.1, dbj|BAI30962.1, emb|CAA28982.1, emb|CAQ98849.1, emb|CAU98008.1, eric|ABE-0006373, eric|ABQ-0073162, eric|ABT-0088244, eric|ADD-0001299, eric|ADJ-0004557, eric|ADK-0003189, eric|ADL-0004353, eric|ADM-0004044, eric|ADN-0003953, eric|ADO-0006584, eric|ADP-0004242, eric|ADV-0001196, eric|ADY-0001963, eric|BAB-0003740, gb|AAA24755.1, gb|AAC74981.1, gb|AAN43508.1, gb|AAP17338.1, gb|AAZ87924.1, gb|ABB65737.1, gb|ABV17861.1, gb|ACB03104.1, gb|ACB19458.1, gb|ACD07434.1, gb|ACR62854.1, gb|ACT28780.1, gb|EDU62929.1, gb|EDV61419.1, gb|EDV80621.1, gb|EDV86003.1, gb|EDX28325.1, gb|EDX37507.1, gi|157078153, gi|157156123, gi|16129861, gi|169889397, gi|170081562, gi|170521280, gi|170683562, gi|1736573, gi|1788222, gi|187428160, gi|187731168, gi|188487826, gi|188492627, gi|190901663, gi|191168291, gi|192925975, gi|192955524, gi|193066390, gi|193071129, gi|194412013, gi|194421493, gi|194429924, gi|194439584, gi|209912594, gi|209919335, gi|218352252, gi|218361265, gi|218554497, gi|218695520, gi|238860856, gi|238901123, gi|24052298, gi|24113291, gi|253324178, gi|253773134, gi|256017889, gi|256022428, gi|257759465, gi|30041610, gi|30063358, gi|551848, gi|581252, gi|73855217, gi|74311740, gi|81245029, gi|82543618, gi|83288180, gi|83288181, gi|89108749, gnl|md5|4419228249595b504902b9c9, img|637001897, img|637015273, img|637334172, img|637424018, img|637806845, img|638657806, img|638668076, img|638672559, img|638677213, img|638686168, img|638690780, img|638695145, img|638868837, img|640429005, img|640925817, img|641607520, img|641616147, img|641725183, kegg|ebd:ECBD_1729, kegg|ebw:BWG_1723, kegg|ecd:ECDH10B_2055, kegg|ecj:JW1899, kegg|eck:EC55989_2134, kegg|ecm:EcSMS35_1269, kegg|eco:b1914, kegg|ecr:ECIAI1_1998, kegg|ecw:EcE24377A_2147, kegg|ecy:ECSE_2144, kegg|sbc:SbBS512_E1041, kegg|sbo:SBO_1092, kegg|sfl:SF1957, kegg|sfx:S2053, kegg|ssn:SSON_1204, ref|AP_002529.1, ref|NP_416424.1, ref|NP_707801.1, ref|NP_837529.1, ref|YP_001463217.1, ref|YP_001730882.1, ref|YP_001743330.1, ref|YP_001879702.1, ref|YP_002293419.1, ref|YP_002387410.1, ref|YP_002403187.1, ref|YP_002926919.1, ref|YP_003035965.1, ref|YP_310159.1, ref|YP_407565.1, ref|ZP_02999897.1, ref|ZP_03030084.1, ref|ZP_03047438.1, ref|ZP_03052053.1, ref|ZP_03062434.1, ref|ZP_03071657.1, ref|ZP_05431754.1, ref|ZP_05436293.1, sp|P0AED5, sp|P0AED6, sp|UVRY_ECOLI, sp|UVRY_SHIFL, tr|A7ZN38, tr|B1LQU3, tr|B1X672, tr|B2N9C8, tr|B2TXF8, tr|B3HH25, tr|B3ICR3, tr|B3IR30, tr|B3WSU1, tr|B3XJ55, tr|B6I0W1, tr|B7L8S6, tr|B7M357, tr|C4ZQJ2, tr|C6EBE8, tr|Q322M1, tr|Q3Z2T8, uvrY
1.1e-17 3 fig|298386.1.peg.400 Photobacterium profundum SS9 Two-component transcriptional response regulator KOX_12280, LuxR family GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, emb|CAG22251.1, gi|46915479, gi|54302058, gnl|md5|fb919caf49296c7aa3f1c84b, img|637588690, kegg|ppr:PBPRB0378, ref|YP_132051.1, tr|Q6LKC9
2.6e-17 3 fig|170187.1.peg.361 Streptococcus pneumoniae TIGR4 Cell envelope stress response system LiaFSR, response regulator LiaR(VraR) GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, GeneID:930305, NP_344914.1, SP0387, cmr|NT02SP0376, cmr|SP_0387, emb|CAB54571.1, emb|CAR68214.1, gb|AAK74554.1, gb|AAK99148.1, gb|ABJ55436.1, gb|ACB89634.1, gb|ACO17865.1, gb|ACO20806.1, gb|EDK64412.1, gb|EDK69456.1, gb|EDK70667.1, gb|EDK77684.1, gb|EDT91686.1, gb|EDT98107.1, gb|EES37837.1, gi|111657155, gi|116077716, gi|116517140, gi|147757373, gi|147762495, gi|147763733, gi|147926611, gi|148988147, gi|148996798, gi|149006139, gi|149012131, gi|14971857, gi|15457902, gi|15900310, gi|15902388, gi|168485529, gi|168576782, gi|182628686, gi|182683352, gi|183571158, gi|183577579, gi|220673718, gi|221231258, gi|225722011, gi|225724954, gi|225856124, gi|225858242, gi|242235526, gi|242246043, gi|5830527, gnl|md5|eea9b6502d53989d38d4f394, img|637173838, img|637191464, img|638493944, img|639677900, img|641065885, img|641070894, img|641076325, img|641079756, img|641708015, img|642187223, img|642215498, kegg|sne:SPN23F_03590, kegg|snm:SP70585_0458, kegg|spd:SPD_0352, kegg|spn:SP_0387, kegg|spp:SPP_0425, kegg|spr:spr0344, kegg|spw:SPCG_0382, ref|NP_344914.1, ref|NP_357938.1, ref|YP_001835099.1, ref|YP_002510410.1, ref|YP_002737635.1, ref|YP_002739752.1, ref|YP_815865.1, ref|ZP_01407935.1, ref|ZP_01819610.1, ref|ZP_01824516.1, ref|ZP_01829868.1, ref|ZP_01833240.1, ref|ZP_02710037.1, ref|ZP_02722640.1, ref|ZP_04800480.1, tr|A5LJW1, tr|A5LYW7, tr|A5ME69, tr|A5MNU1, tr|B2DG63, tr|B2E735, tr|B2ILS8, tr|B8ZLF8, tr|C1C5C6, tr|C1CIP7, tr|C5R6L8, tr|Q04M83, tr|Q8DR45, tr|Q9S1J7
3.3e-17 3 fig|314280.3.peg.4985 Photobacterium profundum 3TCK BarA-associated response regulator UvrY (= GacA = SirA) GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, cmr|NT01PP2324, emb|CAG20624.1, gb|EAS41823.1, gi|46913842, gi|54309406, gi|90325329, gi|90413708, gnl|md5|f84cd22c733f7770640df9ce, img|637586942, img|639099680, kegg|ppr:PBPRA2238, ref|YP_130426.1, ref|ZP_01221697.1, tr|Q1YZQ2, tr|Q6LQ02
4.4e-17 3 fig|211586.1.peg.1698 Shewanella oneidensis MR-1 BarA-associated response regulator UvrY (= GacA = SirA) GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, GeneID:1169628, NP_717468.1, SO1860, cmr|SO_1860, gb|AAN54912.1, gb|AE015629_6, gi|24347703, gi|24373425, gnl|md5|6b3eaf5a3ea48e0b334de498, img|637343748, kegg|son:SO_1860, ref|NP_717468.1, tr|Q8EFV5
4.4e-17 3 fig|312309.3.peg.1627 Vibrio fischeri ES114 BarA-associated response regulator UvrY (= GacA = SirA) GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, GeneID:3278872, LocusTag:VF1627, YP_205010.1, cmr|NT01VF1746, gb|AAQ83589.1, gb|AAW86122.1, gb|ACH66371.1, gi|197316924, gi|197335434, gi|34978694, gi|59480335, gi|59712234, gnl|md5|ac6ffed94572c72342a1b7cc, img|637636320, img|641486584, img|642780731, kegg|vfi:VF_1627, kegg|vfm:VFMJ11_1747, ref|YP_002156448.1, ref|YP_205010.1, tr|B5FF60, tr|Q5E4C4, tr|Q6U738
4.3e-33 2 fig|187410.1.peg.2345 Yersinia pestis KIM Transcriptional regulator of fimbriae expression FimZ (LuxR/UhpA family) GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, GeneID:1147333, NP_669693.1, cmr|NT01YP2224, cmr|NT02YP2840, cmr|NT04YP1778, cmr|NT05YP2137, cmr|NT07YP1411, cmr|YpsIP31758_2160, emb|CAA21376.1, emb|CAH21161.1, emb|CAL20563.1, eric|ABI-0032105, eric|ABY-0121669, eric|ACQ-0238259, eric|ACZ-0002003, eric|ADS-0006133, eric|BAE-0001581, eric|BAF-0001504, eric|BAI-0001430, eric|BAK-0000901, eric|BAL-0002703, eric|BAM-0000539, eric|BAN-0001427, eric|BAP-0000617, eric|BAQ-0001474, fimZ, gb|AAM85944.1, gb|AAS61897.1, gb|ABG13270.1, gb|ABP39595.1, gb|ABS46070.1, gb|ACA68548.1, gb|ACC88938.1, gb|AE013841_9, gb|EDM42625.1, gb|EDR30955.1, gb|EDR38097.1, gb|EDR44199.1, gb|EDR52471.1, gb|EDR57946.1, gb|EDR60814.1, gb|EEO83709.1, gb|EEO90369.1, gi|108779212, gi|108807299, gi|115347650, gi|145210188, gi|145598492, gi|149292551, gi|149366138, gi|152958609, gi|153947114, gi|165912320, gi|165920849, gi|165927181, gi|165939732, gi|165991898, gi|166009343, gi|166207991, gi|166210811, gi|166961925, gi|167049406, gi|167401017, gi|167420230, gi|167466513, gi|169751030, gi|170024496, gi|186698309, gi|186895283, gi|218929039, gi|21959244, gi|22126270, gi|229693660, gi|229702351, gi|229894596, gi|229897323, gi|4106621, gi|45436342, gi|45441481, gi|51589531, gi|51596249, gnl|md5|9d0d4ba5fd6b102f32603f19, img|637200968, img|637310828, img|637492349, img|637533539, img|638043397, img|640478047, img|640865146, img|641104012, img|641597332, img|641788309, img|641825408, img|641828566, img|641835858, img|641841067, img|641892237, img|642608129, kegg|ypa:YPA_1303, kegg|ypb:YPTS_1972, kegg|ype:YPO1925, kegg|ypi:YpsIP31758_2160, kegg|ypk:y2386, kegg|ypm:YP_1667, kegg|ypp:YPDSF_1199, kegg|yps:YPTB1923, kegg|ypy:YPK_2269, ref|NP_669693.1, ref|NP_993020.1, ref|YP_001162568.1, ref|YP_001401133.1, ref|YP_001721001.1, ref|YP_001872395.1, ref|YP_002346914.1, ref|YP_070440.1, ref|YP_651215.1, ref|ZP_01888173.1, ref|ZP_02223013.1, ref|ZP_02228274.1, ref|ZP_02230241.1, ref|ZP_02236846.1, ref|ZP_02306520.1, ref|ZP_02311983.1, ref|ZP_02331217.1, ref|ZP_04509777.1, ref|ZP_04512479.1, tr|A4TJY3, tr|A6BR83, tr|A7FIQ5, tr|A9ZDV4, tr|B0A208, tr|B0GIC4, tr|B0GS62, tr|B0HCI7, tr|B0HS57, tr|B1JMH1, tr|B2K255, tr|C4HNL7, tr|C4HU95, tr|Q1C8F2, tr|Q66B57, tr|Q9ZC35, y2386
9.7e-33 2 fig|360910.3.peg.1891 Bordetella avium 197N virulence factors transcription regulator GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, GOA:Q2L0L5, InterPro:IPR000792, InterPro:IPR001789, InterPro:IPR011006, InterPro:IPR011991, UniProtKB/TrEMBL:Q2L0L5, emb|CAJ49484.1, geneID|6265665, gene_name|bvgA, gi|115422955, gi|187478369, gnl|md5|4fa5d6932c6fbcdac201a3fa, img|641722631, kegg|bav:BAV1875, locus|BAV1875, protein_id|YP_786393.1, ref|YP_786393.1, tr|Q2L0L5
1.6e-029 2 fig|216595.1.peg.1031 Pseudomonas fluorescens SBW25 DNA-binding response regulator, LuxR family GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006355, GO:0043565, emb|CAY48418.1, gi|229361542, gi|229589676, gnl|md5|f3fc037950c649146505ad31, kegg|pfs:PFLU2180, ref|YP_002871795.1, tr|C3K7S2
2.3e-26 2 fig|272564.4.peg.4166 Desulfitobacterium hafniense DCB-2 Two-component transcriptional response regulator, NarL/FixJ family Dhaf_0275, EAT49388.1, GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, InterPro:IPR000792, InterPro:IPR001789, gb|ACL19252.1, gi|109639832, gi|219537513, gi|219667253, gnl|md5|e5329fbd9abd838e57ff8e19, img|638384875, kegg|dhd:Dhaf_1194, ref|YP_002457688.1, tr|B8G137
3.1e-23 2 fig|267608.1.peg.292 Ralstonia solanacearum GMI1000 Two-component transcriptional response regulator, LuxR family GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, GeneID:1219095, NP_518413.1, RSc0292, emb|CAD13820.1, emb|CAQ56584.1, gi|17427301, gi|17545011, gi|206590972, gi|207727731, gnl|md5|73945eb256eeffd7bd1c0e42, img|637236649, kegg|rso:RSc0292, ref|NP_518413.1, ref|YP_002256125.1, tr|Q8Y2P3, vsrD
2.6e-22 2 fig|269798.12.peg.1256 Cytophaga hutchinsonii ATCC 33406 Two-component transcriptional response regulator, NarL/FixJ family CHU_1317, GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, GeneID:4186127, YP_677929.1, cmr|NT02CH1387, gb|ABG58589.1, gi|110280403, gi|110637722, gnl|md5|eb5393fe300453b60f39ae98, img|638071311, kegg|chu:CHU_1317, ref|YP_677929.1, tr|Q11VH7, uhpA
7.7e-22 2 fig|265072.7.peg.1117 Methylobacillus flagellatus KT Two-component transcriptional response regulator, LuxR family GeneID:4000769, InterPro:IPR000792, InterPro:IPR001789, Mfla_1089, YP_545198.1, gi|91775442, gnl|md5|b7591192fd42fc0411bb3de5
1.3e-21 2 fig|292459.1.peg.885 Symbiobacterium thermophilum IAM 14863 Two-component transcriptional response regulator, NarL/FixJ family GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, cmr|NT07ST1107, dbj|BAD39906.1, gi|51855748, gi|51892059, gnl|md5|10c5645d4f1b9b0eac2a7eed, img|637537433, kegg|sth:STH921, ref|YP_074750.1, tr|Q67QY7
2.9e-21 2 fig|243231.1.peg.253 Geobacter sulfurreducens PCA Two-component transcriptional response regulator, NarL/FixJ family GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, GSU0254, GeneID:2687600, NP_951315.1, cmr|GSU_0254, gb|AAR33588.1, gi|39982126, gi|39995364, gnl|md5|df06a491f2b907e2d8343175, img|637124920, kegg|gsu:GSU0254, ref|NP_951315.1, tr|Q74GJ2
1.9e-20 2 fig|156889.7.peg.2168 Magnetococcus sp. MC-1 Two-component transcriptional response regulator, NarL/FixJ family GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, GeneID:4480842, InterPro:IPR000792, InterPro:IPR001789, InterPro:IPR013249, Mmc1_2093, YP_866000.1, cmr|NT01MC0753, gb|ABK44594.1, gi|117609139, gi|117925383, gnl|md5|6364b667cf6a2f30e8d58c48, img|639722837, kegg|mgm:Mmc1_2093, ref|YP_866000.1, tr|A0L9F1
5.5e-20 2 fig|100226.1.peg.1768 Streptomyces coelicolor A3(2) Two-component transcriptional response regulator, NarL/FixJ family GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, GeneID:1097235, NP_626071.1, SCO1801, emb|CAB45293.1, gi|21220292, gi|5123537, gnl|md5|97e19b9de56dde2369d88010, img|637266036, kegg|sco:SCO1801, ref|NP_626071.1, tr|Q9X9Z1
7.2e-20 2 fig|203119.1.peg.2205 Clostridium thermocellum ATCC 27405 Two-component transcriptional response regulator DegU, LuxR family GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, gb|ABN52499.1, gb|EDX92538.1, gb|EEU01621.1, gi|125714007, gi|125973782, gi|196197688, gi|196252895, gi|255991518, gi|256004513, gnl|md5|73e0ed7a9d50836acb26b072, img|640106690, img|642889420, kegg|cth:Cthe_1267, ref|YP_001037692.1, ref|ZP_03151542.1, ref|ZP_05429492.1, tr|A3DEX0, tr|B4BE61
4.7e-19 2 fig|267671.1.peg.3000 Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 Two-component transcriptional response regulator, NarL/FixJ family GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, GeneID:2771628, LIC13088, YP_003000.1, gb|AAS71637.1, gi|45602159, gi|45658914, gnl|md5|a9aaa2de1e775348512eaf19, img|637497961, kegg|lic:LIC13088, ref|YP_003000.1, tr|Q72MV1
1.8e-18 2 fig|269799.3.peg.1809 Geobacter metallireducens GS-15 Two-component transcriptional response regulator, NarL/FixJ family GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, GeneID:3741310, LocusTag:Gmet_2158, YP_385112.1, cmr|NT01GM2255, gb|ABB32387.1, gi|78194620, gi|78223365, gnl|md5|f8d7c8d0127da6a8c8c8c80e, img|637779452, kegg|gme:Gmet_2158, ref|YP_385112.1, tr|Q39TN7
2.3e-18 2 fig|224911.1.peg.6185 Bradyrhizobium japonicum USDA 110 Two-component transcriptional response regulator, LuxR family GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, GeneID:1050667, NP_772825.1, blr6185, dbj|BAC51450.1, gi|27354463, gi|27381296, gnl|md5|9db3603ad222fc159c9c5d18, img|637373773, kegg|bja:blr6185, ref|NP_772825.1, tr|Q89H10
3.9e-18 2 fig|273068.3.peg.1661 Thermoanaerobacter tengcongensis MB4 Two-component transcriptional response regulator, NarL/FixJ family CitB, GENE:CitB, GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, GeneID:996331, LocusTag:TTE1681, NP_623278.1, cmr|NT01TT1842, gb|AAM24882.1, gb|EEB75745.1, gi|20516692, gi|20808107, gi|214035027, gi|254479031, gnl|md5|ebba8fdfeaa2fe83802074e4, img|637263201, kegg|tte:TTE1681, ref|NP_623278.1, ref|ZP_05092387.1, tr|B7R8K5, tr|Q8R9D4
1.5e-17 2 fig|190485.1.peg.1906 Xanthomonas campestris pv. campestris ATCC 33913 Two-component transcriptional response regulator, NarL/FixJ family GO:0000156, GO:0000160, GO:0003700, GO:0005622, GO:0006350, GO:0006355, GO:0043565, GeneID:999132, NP_637301.1, XCC1936, cmr|XCAORF_2214, emb|CAP51588.1, gb|AAM41225.1, gb|AAY49305.1, gi|167733387, gi|188991627, gi|21113049, gi|21231384, gi|66573895, gi|66768563, gnl|md5|dcc7ea11528c555ae4276d3b, img|637274040, img|637657745, img|642629684, kegg|xca:xccb100_2233, kegg|xcb:XC_2250, kegg|xcc:XCC1936, ref|NP_637301.1, ref|YP_001903637.1, ref|YP_243325.1, tr|B0RT02, tr|Q4UUG8, tr|Q8P9C9

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