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The SEED: an Annotation/Analysis Tool Provided by FIG
[ Essentiality Data | FIG Tutorials | Peer-to-peer Updates | Subsystem Update Queue | SEED Control Panel | PATRIC | SEED Wiki] [RAST | GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt ] SEED version cvs.1555556707 (Wed Apr 17 22:05:07 2019) on aspen.cels.anl.gov |
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| Sim. Sc. | Cluster Size | PEG | Genome | Function | Aliases |
|---|---|---|---|---|---|
| 7e-48 | 6 | fig|1031711.3.peg.2047 | Ralstonia solanacearum Po82 | Nitrogen regulation protein NtrB (EC 2.7.13.3) | gene_name|ntrB, gi|334196215, locus|RSPO_c02102, protein_id|AEG69400.1 |
| 1e-44 | 5 | fig|281090.11.peg.2635 | Leifsonia xyli subsp. xyli str. CTCB07 | Single-stranded DNA-binding protein | geneID|2939931, gene_name|ssb, gi|50955941, locus|Lxx25170, protein_id|YP_063229.1 |
| 6e-50 | 4 | fig|518635.5.peg.426 | Bifidobacterium angulatum DSM 20098 | Single-stranded DNA-binding protein | |
| 6e-50 | 4 | fig|518635.7.peg.302 | Bifidobacterium angulatum DSM 20098 = JCM 7096 | Single-stranded DNA-binding protein | InterPro:IPR000424, InterPro:IPR011344, InterPro:IPR012340, gi|229784863, locus|BIFANG_02329, protein_id|EEP20977.1 |
| 6e-49 | 4 | fig|553191.3.peg.1283 | Bifidobacterium dentium JCVIHMP022 | Single-stranded DNA-binding protein | gi|309802025, locus|HMPREF9003_1830, protein_id|ZP_07696138.1 |
| 6e-49 | 4 | fig|871562.3.peg.2112 | Bifidobacterium dentium ATCC 27679 | Single-stranded DNA-binding protein | |
| 6e-49 | 4 | fig|401473.3.peg.1906 | Bifidobacterium dentium Bd1 | Single-stranded DNA-binding protein | geneID|8692779, gene_name|ssb, gi|283456851, locus|BDP_2021, protein_id|YP_003361415.1 |
| 3e-48 | 4 | fig|682147.3.peg.303 | Gardnerella vaginalis AMD | Single-stranded DNA-binding protein | gi|297242913, locus|GVAMD_0925, protein_id|ZP_06926851.1 |
| 3e-48 | 4 | fig|698954.3.peg.381 | Gardnerella vaginalis 6420B | Single-stranded DNA-binding protein | gi|388056193, locus|CGSMWGv6420B_01861, protein_id|EIK79069.1 |
| 4e-48 | 4 | fig|398513.5.peg.942 | Bifidobacterium bifidum NCIMB 41171 | Single-stranded DNA-binding protein | |
| 4e-48 | 4 | fig|702459.3.peg.284 | Bifidobacterium bifidum PRL2010 | Single-stranded DNA-binding protein | geneID|9888440, gene_name|ssb, gi|311063710, locus|BBPR_0272, protein_id|YP_003970435.1 |
| 7e-48 | 4 | fig|547043.8.peg.1630 | Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 | Single-stranded DNA-binding protein | InterPro:IPR000424, InterPro:IPR011344, InterPro:IPR012340, gi|225156735, locus|BIFPSEUDO_04164, protein_id|EEG70129.1 |
| 7e-48 | 4 | fig|367928.5.peg.1554 | Bifidobacterium adolescentis ATCC 15703 | Single-stranded DNA-binding protein | geneID|4556454, gene_name|ssb, gi|119026500, locus|BAD_1482, protein_id|YP_910345.1 |
| 7e-48 | 4 | fig|367928.6.peg.1564 | Bifidobacterium adolescentis ATCC 15703 | Single-stranded DNA-binding protein | geneID|4556454, gene_name|ssb, gi|119026500, locus|BAD_1482, protein_id|YP_910345.1 |
| 7e-48 | 4 | fig|411481.5.peg.1511 | Bifidobacterium adolescentis L2-32 | Single-stranded DNA-binding protein | InterPro:IPR000424, InterPro:IPR008994, InterPro:IPR011344, InterPro:IPR012340, gi|154488159, locus|BIFADO_01731, protein_id|ZP_02029276.1 |
| 1e-47 | 4 | fig|682148.3.peg.831 | Gardnerella vaginalis 5-1 | Single-stranded DNA-binding protein | gi|298253289, locus|GV51_1021, protein_id|ZP_06977081.1 |
| 2e-47 | 4 | fig|566552.4.peg.207 | Bifidobacterium catenulatum DSM 16992 | Single-stranded DNA-binding protein | InterPro:IPR000424, InterPro:IPR011344, InterPro:IPR012340, gi|212715365, locus|BIFCAT_00259, protein_id|ZP_03323493.1 |
| 2e-47 | 4 | fig|566552.6.peg.211 | Bifidobacterium catenulatum DSM 16992 = JCM 1194 | Single-stranded DNA-binding protein | InterPro:IPR000424, InterPro:IPR011344, InterPro:IPR012340, gi|212661671, locus|BIFCAT_00259, protein_id|EEB22246.1 |
| 5e-47 | 4 | fig|1161745.3.peg.1122 | Bifidobacterium longum subsp. longum 2-2B | Single-stranded DNA-binding protein | gene_name|ssb_1, gi|386410087, locus|HMPREF1315_1995, protein_id|EIJ24898.1 |
| 5e-47 | 4 | fig|1161904.3.peg.1902 | Bifidobacterium longum subsp. longum 35B | Single-stranded DNA-binding protein | gene_name|ssb, gi|386407325, locus|HMPREF1314_0468, protein_id|EIJ22304.1 |
| 5e-47 | 4 | fig|565042.3.peg.225 | Bifidobacterium longum subsp. longum JCM 1217 | Single-stranded DNA-binding protein | geneID|10208984, gi|322690410, locus|BLLJ_0218, protein_id|YP_004219980.1 |
| 5e-47 | 4 | fig|759350.3.peg.234 | Bifidobacterium longum subsp. longum JDM301 | Single-stranded DNA-binding protein | geneID|9188902, gi|296453410, locus|BLJ_0234, protein_id|YP_003660553.1 |
| 5e-47 | 4 | fig|1161743.3.peg.1169 | Bifidobacterium longum subsp. longum 44B | Single-stranded DNA-binding protein | gene_name|ssb_3, gi|386415944, locus|HMPREF1312_1331, protein_id|EIJ30463.1 |
| 5e-47 | 4 | fig|1161744.3.peg.2046 | Bifidobacterium longum subsp. longum 1-6B | Single-stranded DNA-binding protein | gene_name|ssb_1, gi|386407001, locus|HMPREF1313_0837, protein_id|EIJ21993.1 |
| 5e-47 | 4 | fig|205913.6.peg.1234 | Bifidobacterium longum DJO10A | Single-stranded DNA-binding protein | geneID|6363854, gene_name|ssb2, gi|189440080, locus|BLD_1218, protein_id|YP_001955161.1 |
| 5e-47 | 4 | fig|469594.3.peg.1179 | Bifidobacterium sp. 12_1_47BFAA | Single-stranded DNA-binding protein | |
| 5e-47 | 4 | fig|537937.5.peg.420 | Bifidobacterium longum subsp. infantis CCUG 52486 | Single-stranded DNA-binding protein | |
| 5e-47 | 4 | fig|548480.3.peg.1747 | Bifidobacterium longum subsp. infantis ATCC 55813 | Single-stranded DNA-binding protein | gi|227545707, locus|HMPREF0175_0129, protein_id|ZP_03975756.1 |
| 5e-47 | 4 | fig|565040.3.peg.206 | Bifidobacterium longum subsp. infantis 157F | Single-stranded DNA-binding protein | geneID|10206893, gi|322688390, locus|BLIF_0199, protein_id|YP_004208124.1 |
| 5e-47 | 4 | fig|722911.3.peg.1274 | Bifidobacterium longum subsp. longum F8 | Single-stranded DNA-binding protein | |
| 6e-47 | 4 | fig|391904.3.peg.238 | Bifidobacterium longum subsp. infantis ATCC 15697 | Single-stranded DNA-binding protein | InterPro:IPR000424, InterPro:IPR010913, InterPro:IPR011344, geneID|7055677, gi|213691156, locus|Blon_0235, protein_id|YP_002321742.1 |
| 6e-47 | 4 | fig|391904.5.peg.237 | Bifidobacterium longum subsp. infantis ATCC 15697 | Single-stranded DNA-binding protein | InterPro:IPR000424, InterPro:IPR010913, InterPro:IPR011344, geneID|7055677, gi|213691156, locus|Blon_0235, protein_id|YP_002321742.1 |
| 6e-47 | 4 | fig|391904.8.peg.241 | Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 | Single-stranded DNA-binding protein | gi|320457214, locus|BLIJ_0241, protein_id|BAJ67835.1 |
| 1e-46 | 4 | fig|206672.9.peg.1160 | Bifidobacterium longum NCC2705 | Single-stranded DNA-binding protein | geneID|1022035, gene_name|ssb, gi|23465013, locus|BL0415, protein_id|NP_695616.1 |
| 4e-46 | 4 | fig|561180.4.peg.1398 | Bifidobacterium gallicum DSM 20093 | Single-stranded DNA-binding protein | CDD:136499, gi|261338590, locus|BgalD2_030100007137, protein_id|ZP_05966474.1 |
| 1e-44 | 4 | fig|281090.3.peg.2016 | Leifsonia xyli subsp. xyli str. CTCB07 | Single-stranded DNA-binding protein | GENE:ssb, GeneID:2939931, LocusTag:Lxx25170, YP_063229.1, gi|50955941, ssb |
| 7e-48 | 3 | fig|1680.3.peg.1089 | Bifidobacterium adolescentis | Single-stranded DNA-binding protein | LocusTag:Badol_01000896, ZP_01029149.1, cds.1089, gi|85666926 |
| 5e-47 | 3 | fig|205913.1.peg.730 | Bifidobacterium longum DJO10A | Single-stranded DNA-binding protein | Blon020765, CDD:pfam00436, CDD:pfam00577, CDD:pfam02422, CDD:pfam05329, CDD:pfam05918, CDD:pfam06273, CDD:pfam07172, CDD:pfam07243, CDD:pfam07466, COG: COG0629, ZP_00120885.1, gi|23335651 |
| 1e-46 | 3 | fig|206672.1.peg.385 | Bifidobacterium longum NCC2705 | Single-stranded DNA-binding protein | BL0415, GeneID:1022035, NP_695616.1, gi|23465013, ssb |
| 6e-49 | 2 | fig|349966.5.peg.3465 | Yersinia frederiksenii ATCC 33641 | Hemolysin activator protein precursor | gi|238789930, locus|yfred0001_28610, protein_id|ZP_04633710.1 |