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The SEED: an Annotation/Analysis Tool Provided by FIG
[ Essentiality Data | FIG Tutorials | Peer-to-peer Updates | Subsystem Update Queue | SEED Control Panel | PATRIC | SEED Wiki] [RAST | GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt ] SEED version cvs.1555556707 (Wed Apr 17 22:05:07 2019) on gum.mcs.anl.gov |
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| Sim. Sc. | Cluster Size | PEG | Genome | Function | Aliases |
|---|---|---|---|---|---|
| 7e-48 | 6 | fig|1031711.3.peg.2047 | Ralstonia solanacearum Po82 | Nitrogen regulation protein NtrB (EC 2.7.13.3) | gene_name|ntrB, gi|334196215, locus|RSPO_c02102, protein_id|AEG69400.1 |
| 1e-44 | 5 | fig|281090.11.peg.2635 | Leifsonia xyli subsp. xyli str. CTCB07 | Single-stranded DNA-binding protein | GO:0003697, GO:0006260, cmr|NT01LX2846, gb|AAT90124.1, geneID|2939931, gene_name|ssb, gi|50952423, gi|50955941, gnl|md5|f942e3e258ace220a684c989, img|637527132, kegg|lxx:Lxx25170, locus|Lxx25170, protein_id|YP_063229.1, ref|YP_063229.1, tr|Q6ABW8 |
| 6e-50 | 4 | fig|518635.5.peg.426 | Bifidobacterium angulatum DSM 20098 | Single-stranded DNA-binding protein | gb|EEP20977.1, gi|229784863, gi|229817074, gnl|md5|72de4b49e99627ce8706ead7, ref|ZP_04447356.1, tr|C4FDE6 |
| 6e-50 | 4 | fig|518635.7.peg.302 | Bifidobacterium angulatum DSM 20098 = JCM 7096 | Single-stranded DNA-binding protein | InterPro:IPR000424, InterPro:IPR011344, InterPro:IPR012340, gi|229784863, locus|BIFANG_02329, protein_id|EEP20977.1 |
| 6e-49 | 4 | fig|553191.3.peg.1283 | Bifidobacterium dentium JCVIHMP022 | Single-stranded DNA-binding protein | gi|309802025, locus|HMPREF9003_1830, protein_id|ZP_07696138.1 |
| 6e-49 | 4 | fig|871562.3.peg.2112 | Bifidobacterium dentium ATCC 27679 | Single-stranded DNA-binding protein | |
| 6e-49 | 4 | fig|401473.3.peg.1906 | Bifidobacterium dentium Bd1 | Single-stranded DNA-binding protein | GO:0003697, GO:0006260, gb|EDT45290.1, geneID|8692779, gene_name|ssb, gi|171277629, gi|171742015, gi|283456851, gnl|md5|1d2e7f8e86f7c0649db9e8ba, img|642327667, locus|BDP_2021, protein_id|YP_003361415.1, ref|ZP_02917822.1, tr|B1SA20 |
| 3e-48 | 4 | fig|682147.3.peg.303 | Gardnerella vaginalis AMD | Single-stranded DNA-binding protein | gi|297242913, gnl|md5|ac834105263278531413b3f7, locus|GVAMD_0925, protein_id|ZP_06926851.1 |
| 3e-48 | 4 | fig|698954.3.peg.381 | Gardnerella vaginalis 6420B | Single-stranded DNA-binding protein | gi|388056193, locus|CGSMWGv6420B_01861, protein_id|EIK79069.1 |
| 4e-48 | 4 | fig|398513.5.peg.942 | Bifidobacterium bifidum NCIMB 41171 | Single-stranded DNA-binding protein | gi|224282368, gnl|md5|ae376b2db7b7774af15a2f01, ref|ZP_03645690.1 |
| 4e-48 | 4 | fig|702459.3.peg.284 | Bifidobacterium bifidum PRL2010 | Single-stranded DNA-binding protein | geneID|9888440, gene_name|ssb, gi|311063710, locus|BBPR_0272, protein_id|YP_003970435.1 |
| 7e-48 | 4 | fig|547043.8.peg.1630 | Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 | Single-stranded DNA-binding protein | InterPro:IPR000424, InterPro:IPR011344, InterPro:IPR012340, gi|225156735, locus|BIFPSEUDO_04164, protein_id|EEG70129.1 |
| 7e-48 | 4 | fig|367928.5.peg.1554 | Bifidobacterium adolescentis ATCC 15703 | Single-stranded DNA-binding protein | GO:0003697, GO:0006260, dbj|BAF40263.1, gb|EDN82677.1, geneID|4556454, gene_name|ssb, gi|118766084, gi|119026500, gi|154083632, gi|154488159, gnl|md5|021bcb45179079993bf0f007, img|639764447, img|641041211, kegg|bad:BAD_1482, locus|BAD_1482, protein_id|YP_910345.1, ref|YP_910345.1, ref|ZP_02029276.1, tr|A1A3I0, tr|A7A794 |
| 7e-48 | 4 | fig|367928.6.peg.1564 | Bifidobacterium adolescentis ATCC 15703 | Single-stranded DNA-binding protein | GO:0003697, GO:0006260, dbj|BAF40263.1, gb|EDN82677.1, geneID|4556454, gene_name|ssb, gi|118766084, gi|119026500, gi|154083632, gi|154488159, gnl|md5|021bcb45179079993bf0f007, img|639764447, img|641041211, kegg|bad:BAD_1482, locus|BAD_1482, protein_id|YP_910345.1, ref|YP_910345.1, ref|ZP_02029276.1, tr|A1A3I0, tr|A7A794 |
| 7e-48 | 4 | fig|411481.5.peg.1511 | Bifidobacterium adolescentis L2-32 | Single-stranded DNA-binding protein | GO:0003697, GO:0006260, InterPro:IPR000424, InterPro:IPR008994, InterPro:IPR011344, InterPro:IPR012340, dbj|BAF40263.1, gb|EDN82677.1, gi|118766084, gi|119026500, gi|154083632, gi|154488159, gnl|md5|021bcb45179079993bf0f007, img|639764447, img|641041211, kegg|bad:BAD_1482, locus|BIFADO_01731, protein_id|ZP_02029276.1, ref|YP_910345.1, ref|ZP_02029276.1, tr|A1A3I0, tr|A7A794 |
| 1e-47 | 4 | fig|682148.3.peg.831 | Gardnerella vaginalis 5-1 | Single-stranded DNA-binding protein | gi|298253289, gnl|md5|8e807de97705b5bea7444bb4, locus|GV51_1021, protein_id|ZP_06977081.1 |
| 2e-47 | 4 | fig|566552.4.peg.207 | Bifidobacterium catenulatum DSM 16992 | Single-stranded DNA-binding protein | GO:0003697, GO:0006260, InterPro:IPR000424, InterPro:IPR011344, InterPro:IPR012340, gb|EEB22246.1, gi|212661671, gi|212715365, gnl|md5|b07842185230d51f1b059ced, locus|BIFCAT_00259, protein_id|ZP_03323493.1, ref|ZP_03323493.1, tr|B6XSY5 |
| 2e-47 | 4 | fig|566552.6.peg.211 | Bifidobacterium catenulatum DSM 16992 = JCM 1194 | Single-stranded DNA-binding protein | InterPro:IPR000424, InterPro:IPR011344, InterPro:IPR012340, gi|212661671, locus|BIFCAT_00259, protein_id|EEB22246.1 |
| 5e-47 | 4 | fig|1161745.3.peg.1122 | Bifidobacterium longum subsp. longum 2-2B | Single-stranded DNA-binding protein | gene_name|ssb_1, gi|386410087, locus|HMPREF1315_1995, protein_id|EIJ24898.1 |
| 5e-47 | 4 | fig|1161904.3.peg.1902 | Bifidobacterium longum subsp. longum 35B | Single-stranded DNA-binding protein | gene_name|ssb, gi|386407325, locus|HMPREF1314_0468, protein_id|EIJ22304.1 |
| 5e-47 | 4 | fig|565042.3.peg.225 | Bifidobacterium longum subsp. longum JCM 1217 | Single-stranded DNA-binding protein | geneID|10208984, gi|322690410, locus|BLLJ_0218, protein_id|YP_004219980.1 |
| 5e-47 | 4 | fig|759350.3.peg.234 | Bifidobacterium longum subsp. longum JDM301 | Single-stranded DNA-binding protein | geneID|9188902, gi|296453410, gnl|md5|12006e719bf3e2f80b73990d, locus|BLJ_0234, protein_id|YP_003660553.1 |
| 5e-47 | 4 | fig|1161743.3.peg.1169 | Bifidobacterium longum subsp. longum 44B | Single-stranded DNA-binding protein | gene_name|ssb_3, gi|386415944, locus|HMPREF1312_1331, protein_id|EIJ30463.1 |
| 5e-47 | 4 | fig|1161744.3.peg.2046 | Bifidobacterium longum subsp. longum 1-6B | Single-stranded DNA-binding protein | gene_name|ssb_1, gi|386407001, locus|HMPREF1313_0837, protein_id|EIJ21993.1 |
| 5e-47 | 4 | fig|205913.6.peg.1234 | Bifidobacterium longum DJO10A | Single-stranded DNA-binding protein | GO:0003697, GO:0006260, gb|ACD98663.1, gb|EEI81662.1, gb|EEQ54483.1, geneID|6363854, gene_name|ssb2, gi|189428515, gi|189440080, gi|227213823, gi|227545707, gi|23335651, gi|239514616, gi|239622619, gnl|md5|94918d80c3e7ab412cc8ccf0, img|638405446, img|642680395, kegg|blj:BLD_1218, locus|BLD_1218, protein_id|YP_001955161.1, ref|YP_001955161.1, ref|ZP_00120885.1, ref|ZP_03975756.1, ref|ZP_04665650.1, tr|B3DU44, tr|C2GSY3, tr|C5E8Z0 |
| 5e-47 | 4 | fig|469594.3.peg.1179 | Bifidobacterium sp. 12_1_47BFAA | Single-stranded DNA-binding protein | |
| 5e-47 | 4 | fig|537937.5.peg.420 | Bifidobacterium longum subsp. infantis CCUG 52486 | Single-stranded DNA-binding protein | GO:0003697, GO:0006260, gb|ACD98663.1, gb|EEI81662.1, gb|EEQ54483.1, gi|189428515, gi|189440080, gi|227213823, gi|227545707, gi|23335651, gi|239514616, gi|239622619, gnl|md5|94918d80c3e7ab412cc8ccf0, img|638405446, img|642680395, kegg|blj:BLD_1218, ref|YP_001955161.1, ref|ZP_00120885.1, ref|ZP_03975756.1, ref|ZP_04665650.1, tr|B3DU44, tr|C2GSY3, tr|C5E8Z0 |
| 5e-47 | 4 | fig|548480.3.peg.1747 | Bifidobacterium longum subsp. infantis ATCC 55813 | Single-stranded DNA-binding protein | GO:0003697, GO:0006260, gb|ACD98663.1, gb|EEI81662.1, gb|EEQ54483.1, gi|189428515, gi|189440080, gi|227213823, gi|227545707, gi|23335651, gi|239514616, gi|239622619, gnl|md5|94918d80c3e7ab412cc8ccf0, img|638405446, img|642680395, kegg|blj:BLD_1218, locus|HMPREF0175_0129, protein_id|ZP_03975756.1, ref|YP_001955161.1, ref|ZP_00120885.1, ref|ZP_03975756.1, ref|ZP_04665650.1, tr|B3DU44, tr|C2GSY3, tr|C5E8Z0 |
| 5e-47 | 4 | fig|565040.3.peg.206 | Bifidobacterium longum subsp. infantis 157F | Single-stranded DNA-binding protein | geneID|10206893, gi|322688390, locus|BLIF_0199, protein_id|YP_004208124.1 |
| 5e-47 | 4 | fig|722911.3.peg.1274 | Bifidobacterium longum subsp. longum F8 | Single-stranded DNA-binding protein | |
| 6e-47 | 4 | fig|391904.3.peg.238 | Bifidobacterium longum subsp. infantis ATCC 15697 | Single-stranded DNA-binding protein | GO:0003697, GO:0006260, InterPro:IPR000424, InterPro:IPR010913, InterPro:IPR011344, gb|ACJ51364.1, geneID|7055677, gi|213522617, gi|213691156, gnl|md5|95509512aa02f7122cef4e3e, kegg|bln:Blon_0235, locus|Blon_0235, protein_id|YP_002321742.1, ref|YP_002321742.1, tr|B7GTS3 |
| 6e-47 | 4 | fig|391904.5.peg.237 | Bifidobacterium longum subsp. infantis ATCC 15697 | Single-stranded DNA-binding protein | GO:0003697, GO:0006260, InterPro:IPR000424, InterPro:IPR010913, InterPro:IPR011344, gb|ACJ51364.1, geneID|7055677, gi|213522617, gi|213691156, gnl|md5|95509512aa02f7122cef4e3e, kegg|bln:Blon_0235, locus|Blon_0235, protein_id|YP_002321742.1, ref|YP_002321742.1, tr|B7GTS3 |
| 6e-47 | 4 | fig|391904.8.peg.241 | Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 | Single-stranded DNA-binding protein | gi|320457214, locus|BLIJ_0241, protein_id|BAJ67835.1 |
| 1e-46 | 4 | fig|206672.9.peg.1160 | Bifidobacterium longum NCC2705 | Single-stranded DNA-binding protein | GO:0003697, GO:0006260, GO:0006281, cmr|NT01BL0453, gb|AAN24252.1, geneID|1022035, gene_name|ssb, gi|23325615, gi|23465013, gi|37999437, gnl|md5|f37d535e7cee3fc878d9573c, img|637328252, kegg|blo:BL0415, locus|BL0415, protein_id|NP_695616.1, ref|NP_695616.1, sp|Q8G757, sp|SSB_BIFLO |
| 4e-46 | 4 | fig|561180.4.peg.1398 | Bifidobacterium gallicum DSM 20093 | Single-stranded DNA-binding protein | CDD:136499, gi|261338590, gnl|md5|8f17bff6e027ee2fb8213198, locus|BgalD2_030100007137, protein_id|ZP_05966474.1 |
| 1e-44 | 4 | fig|281090.3.peg.2016 | Leifsonia xyli subsp. xyli str. CTCB07 | Single-stranded DNA-binding protein | GENE:ssb, GO:0003697, GO:0006260, GeneID:2939931, LocusTag:Lxx25170, YP_063229.1, cmr|NT01LX2846, gb|AAT90124.1, gi|50952423, gi|50955941, gnl|md5|f942e3e258ace220a684c989, img|637527132, kegg|lxx:Lxx25170, ref|YP_063229.1, ssb, tr|Q6ABW8 |
| 7e-48 | 3 | fig|1680.3.peg.1089 | Bifidobacterium adolescentis | Single-stranded DNA-binding protein | GO:0003697, GO:0006260, LocusTag:Badol_01000896, ZP_01029149.1, cds.1089, dbj|BAF40263.1, gb|EDN82677.1, gi|118766084, gi|119026500, gi|154083632, gi|154488159, gi|85666926, gnl|md5|021bcb45179079993bf0f007, img|639764447, img|641041211, kegg|bad:BAD_1482, ref|YP_910345.1, ref|ZP_02029276.1, tr|A1A3I0, tr|A7A794 |
| 5e-47 | 3 | fig|205913.1.peg.730 | Bifidobacterium longum DJO10A | Single-stranded DNA-binding protein | Blon020765, CDD:pfam00436, CDD:pfam00577, CDD:pfam02422, CDD:pfam05329, CDD:pfam05918, CDD:pfam06273, CDD:pfam07172, CDD:pfam07243, CDD:pfam07466, COG: COG0629, GO:0003697, GO:0006260, ZP_00120885.1, gb|ACD98663.1, gb|EEI81662.1, gb|EEQ54483.1, gi|189428515, gi|189440080, gi|227213823, gi|227545707, gi|23335651, gi|239514616, gi|239622619, gnl|md5|94918d80c3e7ab412cc8ccf0, img|638405446, img|642680395, kegg|blj:BLD_1218, ref|YP_001955161.1, ref|ZP_00120885.1, ref|ZP_03975756.1, ref|ZP_04665650.1, tr|B3DU44, tr|C2GSY3, tr|C5E8Z0 |
| 1e-46 | 3 | fig|206672.1.peg.385 | Bifidobacterium longum NCC2705 | Single-stranded DNA-binding protein | BL0415, GO:0003697, GO:0006260, GO:0006281, GeneID:1022035, NP_695616.1, cmr|NT01BL0453, gb|AAN24252.1, gi|23325615, gi|23465013, gi|37999437, gnl|md5|f37d535e7cee3fc878d9573c, img|637328252, kegg|blo:BL0415, ref|NP_695616.1, sp|Q8G757, sp|SSB_BIFLO, ssb |
| 6e-49 | 2 | fig|349966.5.peg.3465 | Yersinia frederiksenii ATCC 33641 | Hemolysin activator protein precursor | gi|238789930, gnl|md5|db3246d0d12383c42ea2ff84, locus|yfred0001_28610, protein_id|ZP_04633710.1 |