Subsystem: D-galactonate catabolism
This subsystem's description is:
D-Galactonate is catabolized to give pyruvate and glyceraldehyde-3-phosphate by a pathway that involves the sequential reactions of galactonate dehydratase (GalD), 2-keto-3-deoxy-galactonate kinase (DgoK), and 6-phospho-2-keto-3-deoxy-galactonate aldolase (DgoA).
Only GalD was characterized experimentally.
Uptake of D-galactonate is believed to be mediated by DgoT in E.coli.
For more information, please check out the description and the additional notes tabs, below
Literature References | A functionally diverse enzyme superfamily that abstracts the alpha protons of carboxylic acids. Babbitt PC Science (New York, N.Y.) 1995 Feb 24 | 7855594 | Pathway for D-galactonate catabolism in nonpathogenic mycobacteria. SzumiĆo T Journal of bacteriology 1981 Oct | 7287628 |
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Diagram | Functional Roles | Subsystem Spreadsheet | Description | Additional Notes | Scenarios | |||||||||
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D-Galactonate is catabolized to give pyruvate and glyceraldehyde-3-phosphate by a pathway that involves the sequential reactions of galactonate dehydratase (GalD), 2-keto-3-deoxy-galactonate kinase (DgoK), and 6-phospho-2-keto-3-deoxy-galactonate aldolase (DgoA). Only GalD was characterized experimentally. Uptake of D-galactonate is believed to be mediated by DgoT in E.coli. Open problems: In E.coli, D-galactonate is taken up using specific permease. However in other species, it could be produced from D-galactose by galactose-1-dehydrogenase (EC 1.1.1.48) and in some organisms may require also 1,4-lactonase. In a-proteobacteria, DgoK and DgoA are present but homologous GalD is absent. In clusters with dgoK-dgoA there are numerouse genes that could supplement this gap: 1. putative dehydratase from the IlvD/Edd family; 2. Short chain dehydrogenase/reductase (similar to 3-oxoacyl-(acyl carrier protein) reductase) 3. galactose-1-dehydrogenase (EC 1.1.1.48)(pointing out for using D-galactose as a source) 4. Gluconolactonase (EC 3.1.1.17) 5. transcriptional regulator from the IclR family (predicted regulator of dgo genes) References: Science. 1995 Feb 24;267(5201):1159-61. PMID: 7855594 Szumilo T. J Bacteriol. 1981 Oct;148(1):368-70 (PMID: 7287628) Currently selected organism: Escherichia coli 2731150 (open scenarios overview page for organism) |