Blast ProDom Result

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Release2012.1

Your ncbi-blastp Query : "unkwown"

 

database:multiple alignments
Program:ncbi-blastp
Matrix:BLOSUM62
Expect:.01
Filter:seq

Graphical results and forms to other applications

The following is the graphical representation of the HSP found by BLAST.
Please note that HSPs are sorted from highest to lowest scores, so that lower scoring HSPs may be hidden.
PDC6C8F0 score=116 PD453920 score=220


Align subsequence with ProDom domains, using Multalin

Domain IDBEGINEND 
PD453920
PDC6C8F0



HSP Results

Warning: Original output has been filtered to yield non-redundant similarities

blastp 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
_quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs_quot;,  Nucleic Acids Res. 25:3389-3402.

Query: unkwown
	(76 letters)

Database: prodom2010.1 multiple alignments
	45,292,438 sequences; 2,147,483,647 total letters



ProDom domains producing High-scoring Segment Pairs:

  Position  ProDom domain                                      Score E value

      5-29  #PDC6C8F0                                            116 5e-07
     30-75  #PD453920                                            220 3e-22


>PD453920 (Closest domain: Q2FUV8_STAA8 54-99)
Number of domains in family: 65
Commentary (automatic):
SUBNAME: FULL=PUTATIVE UNCHARACTERIZED REFERENCE MW1377 SA2450 FULL=PREDICTED  
Length = 46
Score = 220  (89.4 bits), Expect = 3e-22
Identities = 46/46 (100%), Positives = 46/46 (100%)

 Query:     30 ILETELRAVINSMSQNEGKSVDALKNSTASLKNNLTKLKEQLDKTT 75
               ILETELRAVINSMSQNEGKSVDALKNSTASLKNNLTKLKEQLDKTT
 Sbjct:     54 ILETELRAVINSMSQNEGKSVDALKNSTASLKNNLTKLKEQLDKTT 99

>PDC6C8F0 (Closest domain: D8HGA0_STAAF 623-651) Number of domains in family: 43 Commentary (automatic): SUBNAME: FULL=PUTATIVE UNCHARACTERIZED REFERENCE SA2450 Length = 29 Score = 116 (49.3 bits), Expect = 5e-07 Identities = 25/25 (100%), Positives = 25/25 (100%)
 Query:      5 KNALLSDSLLRDIKVLSSNAKGDAD 29
               KNALLSDSLLRDIKVLSSNAKGDAD
 Sbjct:    627 KNALLSDSLLRDIKVLSSNAKGDAD 651