Blast ProDom Result

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Release2012.1

Your ncbi-blastp Query : "unkwown"

 

database:multiple alignments
Program:ncbi-blastp
Matrix:BLOSUM62
Expect:.01
Filter:seq

Graphical results and forms to other applications

The following is the graphical representation of the HSP found by BLAST.
Please note that HSPs are sorted from highest to lowest scores, so that lower scoring HSPs may be hidden.
PDD152J9 score=236 PD462196 score=658


Align subsequence with ProDom domains, using Multalin

Domain IDBEGINEND 
PD462196
PDD152J9
PDC4R3G0



HSP Results

Warning: Original output has been filtered to yield non-redundant similarities

blastp 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
_quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs_quot;,  Nucleic Acids Res. 25:3389-3402.

Query: unkwown
	(195 letters)

Database: prodom2010.1 multiple alignments
	45,292,438 sequences; 2,147,483,647 total letters



ProDom domains producing High-scoring Segment Pairs:

  Position  ProDom domain                                      Score E value

      1-48  #PDD152J9                                            236 4e-23
    14-189  #PDC4R3G0                                            113 9e-05
    49-191  #PD462196                                            658 3e-85


>PD462196 (Closest domain: Q8CRD4_STAES 49-191)
Number of domains in family: 49
Commentary (automatic):
SUBNAME: FULL=PUTATIVE UNCHARACTERIZED MEMBRANE PRECURSOR FLAGS: SIGNAL FULL=PROBABLE SERINE/THREONINE-PROTEIN AT5G35370  
Length = 143
Score = 658  (258.1 bits), Expect = 3e-85
Identities = 131/143 (91%), Positives = 132/143 (92%)

 Query:     49 FVNNNIRNHMIWVSPKLDRILGMISGILYFGIYVVGFIKQQPLWIVMLILVSTVGTAVLL 108
               FVNNNIRNHMIWVSPKLDRILGMISGILYFGIYVVGFIKQQPLWIV+LILVSTVGTAVLL
 Sbjct:     49 FVNNNIRNHMIWVSPKLDRILGMISGILYFGIYVVGFIKQQPLWIVILILVSTVGTAVLL 108

 Query:    109 ETKLHITSLQLEETLSSERIKRKVISRHKAQRLKCXXXXXXXXXXXSMLISLYLKLMVIF 168
               ETKLHITSLQLEETLSSERIKRKVISRHKAQRLKC           SMLISLYLKLMVIF
 Sbjct:    109 ETKLHITSLQLEETLSSERIKRKVISRHKAQRLKCIFFTVIVVVIISMLISLYLKLMVIF 168

 Query:    169 GLAVTIFILASISVAIFEKYFTI 191
               GLAVTIFILASISVAIFEKYFTI
 Sbjct:    169 GLAVTIFILASISVAIFEKYFTI 191

>PDD152J9 (Closest domain: Q8CRD4_STAES 1-48) Number of domains in family: 2 Commentary (automatic): SUBNAME: FULL=PUTATIVE UNCHARACTERIZED Length = 48 Score = 236 (95.5 bits), Expect = 4e-23 Identities = 48/48 (100%), Positives = 48/48 (100%)
 Query:      1 MKAYLYKFMPLLIFVIGLIIFYVFNDYPTLIHVIVIIAFITNGLKNVY 48
               MKAYLYKFMPLLIFVIGLIIFYVFNDYPTLIHVIVIIAFITNGLKNVY
 Sbjct:      1 MKAYLYKFMPLLIFVIGLIIFYVFNDYPTLIHVIVIIAFITNGLKNVY 48

>PDC4R3G0 (Closest domain: F8KLS7_STALN 1-193) Number of domains in family: 2 Commentary (automatic): SUBNAME: FULL=PUTATIVE MEMBRANE UNCHARACTERIZED Length = 193 Score = 113 (48.1 bits), Expect = 9e-05 Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 8/179 (4%)
 Query:     14 FVIGLIIFYVFNDYPTLIHVIVIIAFITNGLKNVYFVNNNIRNHMIWVSPKLDRILGMIS 73
               F+IG  + Y+      ++    + A +T     ++ VN +I    IW++P  DR++ ++S
 Sbjct:     15 FMIGCAMMYILELDRKMLVFFAVPAILTVVFAQLFEVNKHINQDQIWLTPFWDRVMAVVS 74

 Query:     74 GILYFGIYVVGFIKQQPLWIVMLI-LVSTVGTAVLLETKLHITSLQLEETLSSERIKRKV 132
                I Y   +V+ FI   P     LI +V T+  ++ L++KL +    L +   S++ K+ V
 Sbjct:     75 IICYGLAFVLVFIGPYPNVAFQLISIVITIAISLFLDSKLGLNRNILSQ--DSQKHKKHV 132

 Query:    133 ISRHKAQRLKC--XXXXXXXXXXXSMLISLYLKLMVIFGLAVTIFILASISVAIFEKYF 189
                   KAQ LK              ++LIS + +   I GLA T+  +  I   IF  ++
 Sbjct:    133 ---PKAQYLKIRYLVITVMVVSVVTILISGFYRWTAILGLAFTMLFIGVIVFIIFNDHY 188