Welcome to the SEED Viewer - a read-only browser of the curated SEED data.
For more information about The SEED please visit theSEED.org. For daily updates on SEED activity visit the Daily SEED
The Annotation Clearinghouse offers a mapping of genes which are identical in sequence except for the start region (due to differences in start calling).
Set function to
phosphonate ABC transporter, phosphonate-binding protein
from original annotations
11/26/2009
rapid_propogation
Set function to
Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)
based on FIGfams
9/17/2014
gjo
Set master function to
Phosphonate ABC transporter substrate-binding protein PhnD (TC 3.A.1.9.1)
9/17/2014
gjo
Assignment projected from fig|282458.1.peg.133 based on identical sequence
9/17/2014
gjo
Set master function to
ABC transporter periplasmic substrate-binding protein
9/17/2014
gjo
Assignment projected from fig|282458.1.peg.133 based on identical sequence
7/27/2015
gjo
Set master function to
ABC transporter, substrate-binding protein
7/27/2015
gjo
Assignment projected from fig|282458.1.peg.133 based on identical sequence
10/7/2016
gjo
Set master function to
ABC transporter, substrate-binding protein (cluster 12, phosphonates)
10/7/2016
gjo
Assignment projected from fig|282458.1.peg.133 based on identical sequence
10/11/2016
gjo
Set master function to
ABC transporter, substrate-binding protein (cluster 12, methionine/phosphonates)
10/11/2016
gjo
Assignment projected from fig|282458.1.peg.133 based on identical sequence
This feature is part of a subsystem
In ABC transporter alkylphosphonate (TC 3.A.1.9.1) its role is Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1).
Compare Regions For fig|451515.3.peg.198
The chromosomal region of the focus gene (top) is compared with four similar organisms. The graphic is centered on the focus gene, which is red and numbered 1. Sets of genes with similar sequence are grouped with the same number and color. Genes whose relative position is conserved in at least four other species are functionally coupled and share gray background boxes. The size of the region and the number of genomes may be reset. Click on any arrow in the display to refocus the comparison on that gene. The focus gene always points to the right, even if it is located on the minus strand.
