Annotation Overview for fig|451515.3.peg.1874 in Staphylococcus aureus subsp. aureus USA300 FPR3757:
RNA polymerase sigma factor SigS

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current assignment	RNA polymerase sigma factor SigS
taxonomy id	451515	contig	NC_007790 (3,125bp)NC_007791 (4,439bp)NC_007792 (37,136bp)NC_007793 (2,872,769bp)
internal links	genome browser | feature evidence | sequence	ACH Annotation Clearinghouse (ACH) The Annotation Clearinghouse offers a mapping of genes which are identical in sequence except for the start region (due to differences in start calling). [?]	show essentially identical genes
annotation history		run tool	Psi-BlastTMpredTMHMMGram negative PSORTGram negative SignalPGram positive PSORTGram positive SignalPLipoPRadarPPSearchGram negative CELLOGram positive CELLOProDomPDBRNAFold
FigFam	FIG01321636	CDD link	show cdd
PATtyfam	PGF_00013187: Hypothetical protein SAV1777 PLF_1279_00002002: Hypothetical protein SAV1777
alignments and trees	1 alignments and trees	PATRIC link	19592889
edit functional role	RNA polymerase sigma factor SigS
aliases	cmr|SAUSA300_1722 gb|ABD20491.1 gb|ABX29772.1 gb|EES95384.1 gb|EEV84269.1 geneID|3914431 gi|160368801 gi|161509992 gi|253726655 gi|253735366 gi|257861466 gi|258450842 gi|87125977 gi|87160003 gnl|md5|542486137c3660c28e6baa43 img|637888370 img|641309725 kegg|saa:SAUSA300_1722 kegg|sax:USA300HOU_1766 locus|SAUSA300_1722 protein_id|YP_494415.1 ref|YP_001575651.1 ref|YP_494415.1 ref|ZP_04869531.1 ref|ZP_05698900.1 tr|C5Q5W2	propagation lock	Unlocked Toggle lock

Annotation History (history of similar genes)

Date	Annotator	Annotation
11/26/2009	rapid_propogation	Set function to hypothetical protein from original annotations
11/26/2009	rapid_propogation	Set function to Hypothetical protein SAV1777 based on FIGfams
6/4/2013	karl.thompson	Set master function to RNA polymerase sigma factor SigS
6/4/2013	karl.thompson	Assignment projected from fig|904747.3.peg.978 based on identical sequence

The chromosomal region of the focus gene (top) is compared with four similar organisms. The graphic is centered on the focus gene, which is red and numbered 1. Sets of genes with similar sequence are grouped with the same number and color. Genes whose relative position is conserved in at least four other species are functionally coupled and share gray background boxes. The size of the region and the number of genomes may be reset. Click on any arrow in the display to refocus the comparison on that gene. The focus gene always points to the right, even if it is located on the minus strand.