Annotation Overview for fig|426430.8.peg.2777 in Staphylococcus aureus subsp. aureus str. Newman:
Biofilm operon icaABCD HTH-type negative transcriptional regulator IcaR
[to old protein page] | current assignment | Biofilm operon icaABCD HTH-type negative transcriptional regulator IcaR | ||||
|---|---|---|---|---|---|
| taxonomy id | 426430 | contig | |||
| internal links | genome browser | feature evidence | sequence | ACH [?] | show essentially identical genes | ||
| PubMed links | 15060048 10496925 | ||||
| annotation history | run tool | ||||
| FigFam | FIG00014093 | CDD link | show cdd | ||
| PATtyfam | PGF_00403764: Biofilm operon icaABCD HTH-type negative transcriptional regulator IcaR PLF_1279_00001893: Biofilm operon icaABCD HTH-type negative transcriptional regulator IcaR | ||||
| alignments and trees | 23 alignments and trees | PATRIC link | 19589004 | ||
| edit functional role | Biofilm operon icaABCD HTH-type negative transcriptional regulator IcaR | ||||
| aliases | propagation lock | ||||
This feature is part of a subsystem
Reasons for Current Assignment
We have assigned the function "Biofilm operon icaABCD HTH-type negative transcriptional regulator
IcaR" to the encoded protein. The protein occurs in 1 subsystem: "Biofilm formation in
Staphylococcus". The function of this gene is asserted in 15060048 and 10496925.
Compare Regions For fig|426430.8.peg.2777
The chromosomal region of the focus gene (top) is compared with four similar organisms. The graphic is centered on the focus gene, which is red and numbered 1. Sets of genes with similar sequence are grouped with the same number and color. Genes whose relative position is conserved in at least four other species are functionally coupled and share gray background boxes. The size of the region and the number of genomes may be reset. Click on any arrow in the display to refocus the comparison on that gene. The focus gene always points to the right, even if it is located on the minus strand.
