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The Annotation Clearinghouse offers a mapping of genes which are identical in sequence except for the start region (due to differences in start calling).
Set function to
threonine dehydratase
from original annotations
1/8/2007
rapid_propogation
Set function to
Threonine dehydratase, catabolic (EC 4.3.1.19)
based on FIGfams
4/12/2014
annotation_transfer
Migrating 2 annotations for fig|323259.5.peg.2052 from core seed (including function assignment) at 2014-04-12 01:15:17
4/12/2014
SvetaG
Migrate assignment from Threonine dehydratase, catabolic (EC 4.3.1.19) to Threonine dehydratase, catabolic (EC 4.3.1.19) @ L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17)
4/12/2014
SvetaG
Assignment projected from fig|83333.1.peg.3063 based on tree proximity
4/12/2014
SvetaG
Set master function to
Threonine dehydratase, catabolic (EC 4.3.1.19) @ L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17)
This feature is part of a subsystem
In Threonine degradation its role is Threonine dehydratase, catabolic (EC 4.3.1.19).
In YggSProC its role is Threonine dehydratase, catabolic (EC 4.3.1.19). However, the functionality of this subsystem has not yet been classified for this organism.
In Glycine and Serine Utilization its role is Threonine dehydratase, catabolic (EC 4.3.1.19).
In Branched-Chain Amino Acid Biosynthesis its role is Threonine dehydratase, catabolic (EC 4.3.1.19).
In RidA family in 981 representative prokaryotes its role is Threonine dehydratase, catabolic (EC 4.3.1.19).
In RidA family in 981 representative prokaryotes its role is L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17).
In TN RidA: all subgroups, 981 genomes PLP its role is Threonine dehydratase, catabolic (EC 4.3.1.19). However, the functionality of this subsystem has not yet been classified for this organism.
In TN RidA: all subgroups, 981 genomes PLP its role is L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17). However, the functionality of this subsystem has not yet been classified for this organism.
In AdiR its role is Threonine dehydratase, catabolic (EC 4.3.1.19). However, the functionality of this subsystem has not yet been classified for this organism.
In GB RidA family in 981 representative prokaryotes its role is Threonine dehydratase, catabolic (EC 4.3.1.19).
In GB RidA family in 981 representative prokaryotes its role is L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17).
In COG2945 its role is Threonine dehydratase, catabolic (EC 4.3.1.19).
In COG2945 its role is L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17).
In Branched-Chain Amino Acid Biosynthesis its role is Threonine dehydratase, catabolic (EC 4.3.1.19).
In Glycine and Serine Utilization its role is Threonine dehydratase, catabolic (EC 4.3.1.19).
In Threonine degradation its role is Threonine dehydratase, catabolic (EC 4.3.1.19).
Reasons for Current Assignment
The encoded protein plays multiple roles which are implemented by the same domain with a broad
specificity. The roles are "Threonine dehydratase, catabolic (EC 4.3.1.19)" and "L-serine
dehydratase, (PLP)-dependent (EC 4.3.1.17)". The protein occurs in 3 subsystems: "Branched-Chain
Amino Acid Biosynthesis", "Glycine and Serine Utilization", and "Threonine degradation". In
"Branched-Chain Amino Acid Biosynthesis", it appears to play a functional role that we have not
associated with any other gene. In "Glycine and Serine Utilization", it appears to play a
functional role that we have not associated with any other gene. In "Threonine degradation", it
appears to play a functional role that we have not associated with any other gene. The function of
genes having the same functional roles have been described in Salmonella typhimurium (6751404). This is a homologous protein which implements the same function.
Compare Regions For fig|323259.5.peg.2052
The chromosomal region of the focus gene (top) is compared with four similar organisms. The graphic is centered on the focus gene, which is red and numbered 1. Sets of genes with similar sequence are grouped with the same number and color. Genes whose relative position is conserved in at least four other species are functionally coupled and share gray background boxes. The size of the region and the number of genomes may be reset. Click on any arrow in the display to refocus the comparison on that gene. The focus gene always points to the right, even if it is located on the minus strand.
